Literature DB >> 29474574

Evidence-based medicine and big genomic data.

John P A Ioannidis1, Muin J Khoury2.   

Abstract

Genomic and other related big data (Big Genomic Data, BGD for short) are ushering a new era of precision medicine. This overview discusses whether principles of evidence-based medicine hold true for BGD and how they should be operationalized in the current era. Major evidence-based medicine principles include the systematic identification, description and analysis of the validity and utility of BGD, the combination of individual clinical expertise with individual patient needs and preferences, and the focus on obtaining experimental evidence, whenever possible. BGD emphasize information of single patients with an overemphasis on N-of-1 trials to personalize treatment. However, large-scale comparative population data remain indispensable for meaningful translation of BGD personalized information. The impact of BGD on population health depends on its ability to affect large segments of the population. While several frameworks have been proposed to facilitate and standardize decision making for use of genomic tests, there are new caveats that arise from BGD that extend beyond the limitations that were applicable for more simple genetic tests. Non-evidence-based use of BGD may be harmful and result in major waste of healthcare resources. Randomized controlled trials will continue to be the strongest arbitrator for the clinical utility of genomic technologies, including BGD. Research on BGD needs to focus not only on finding robust predictive associations (clinical validity) but also more importantly on evaluating the balance of health benefits and potential harms (clinical utility), as well as implementation challenges. Appropriate features of such useful research on BGD are discussed.

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Year:  2018        PMID: 29474574      PMCID: PMC6247896          DOI: 10.1093/hmg/ddy065

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  40 in total

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Journal:  Clin Chem Lab Med       Date:  2010-07-27       Impact factor: 3.694

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Authors:  Iftikhar J Kullo; Hayan Jouni; Erin E Austin; Sherry-Ann Brown; Teresa M Kruisselbrink; Iyad N Isseh; Raad A Haddad; Tariq S Marroush; Khader Shameer; Janet E Olson; Ulrich Broeckel; Robert C Green; Daniel J Schaid; Victor M Montori; Kent R Bailey
Journal:  Circulation       Date:  2016-02-25       Impact factor: 29.690

3.  Direct-to-Consumer Genetic Testing: User Motivations, Decision Making, and Perceived Utility of Results.

Authors:  J Scott Roberts; Michele C Gornick; Deanna Alexis Carere; Wendy R Uhlmann; Mack T Ruffin; Robert C Green
Journal:  Public Health Genomics       Date:  2017-01-10       Impact factor: 2.000

Review 4.  Molecular diagnostics clinical utility strategy: a six-part framework.

Authors:  Felix W Frueh; Bruce Quinn
Journal:  Expert Rev Mol Diagn       Date:  2014-08-09       Impact factor: 5.225

5.  Using N-of-1 trials to improve patient management and save costs.

Authors:  Paul A Scuffham; Jane Nikles; Geoffrey K Mitchell; Michael J Yelland; Norma Vine; Christopher J Poulos; Peter I Pillans; Guy Bashford; Chris del Mar; Philip J Schluter; Paul Glasziou
Journal:  J Gen Intern Med       Date:  2010-04-13       Impact factor: 5.128

Review 6.  Patient-centric trials for therapeutic development in precision oncology.

Authors:  Andrew V Biankin; Steven Piantadosi; Simon J Hollingsworth
Journal:  Nature       Date:  2015-10-15       Impact factor: 49.962

7.  Watson for Oncology and breast cancer treatment recommendations: agreement with an expert multidisciplinary tumor board.

Authors:  S P Somashekhar; M-J Sepúlveda; S Puglielli; A D Norden; E H Shortliffe; C Rohit Kumar; A Rauthan; N Arun Kumar; P Patil; K Rhee; Y Ramya
Journal:  Ann Oncol       Date:  2018-02-01       Impact factor: 32.976

8.  No Shortcuts on the Long Road to Evidence-Based Genomic Medicine.

Authors:  Muin J Khoury
Journal:  JAMA       Date:  2017-07-04       Impact factor: 56.272

9.  Lifestyle Advice Combined with Personalized Estimates of Genetic or Phenotypic Risk of Type 2 Diabetes, and Objectively Measured Physical Activity: A Randomized Controlled Trial.

Authors:  Job G Godino; Esther M F van Sluijs; Theresa M Marteau; Stephen Sutton; Stephen J Sharp; Simon J Griffin
Journal:  PLoS Med       Date:  2016-11-29       Impact factor: 11.069

Review 10.  The impact of communicating genetic risks of disease on risk-reducing health behaviour: systematic review with meta-analysis.

Authors:  Gareth J Hollands; David P French; Simon J Griffin; A Toby Prevost; Stephen Sutton; Sarah King; Theresa M Marteau
Journal:  BMJ       Date:  2016-03-15
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Journal:  Online J Public Health Inform       Date:  2020-05-16

3.  Construction of Clinical Pathway Information Management System under the Guidance of Evidence-Based Medicine.

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Journal:  J Healthc Eng       Date:  2021-12-02       Impact factor: 2.682

Review 4.  Clinical trial design in the era of precision medicine.

Authors:  Elena Fountzilas; Apostolia M Tsimberidou; Henry Hiep Vo; Razelle Kurzrock
Journal:  Genome Med       Date:  2022-08-31       Impact factor: 15.266

5.  The Impact of Communicating Uncertainty on Public Responses to Precision Medicine Research.

Authors:  Chelsea L Ratcliff; Bob Wong; Jakob D Jensen; Kimberly A Kaphingst
Journal:  Ann Behav Med       Date:  2021-10-27

6.  Implications of the ABCD study for developmental neuroscience.

Authors:  Sarah W Feldstein Ewing; James M Bjork; Monica Luciana
Journal:  Dev Cogn Neurosci       Date:  2018-08       Impact factor: 6.464

7.  A Systematic Review of the Value Assessment Frameworks Used within Health Technology Assessment of Omics Technologies and Their Actual Adoption from HTA Agencies.

Authors:  Ilda Hoxhaj; Laurenz Govaerts; Steven Simoens; Walter Van Dyck; Isabelle Huys; Iñaki Gutiérrez-Ibarluzea; Stefania Boccia
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Review 8.  ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries.

Authors:  Paul M Thompson; Neda Jahanshad; Christopher R K Ching; Lauren E Salminen; Sophia I Thomopoulos; Joanna Bright; Bernhard T Baune; Sara Bertolín; Janita Bralten; Willem B Bruin; Robin Bülow; Jian Chen; Yann Chye; Udo Dannlowski; Carolien G F de Kovel; Gary Donohoe; Lisa T Eyler; Stephen V Faraone; Pauline Favre; Courtney A Filippi; Thomas Frodl; Daniel Garijo; Yolanda Gil; Hans J Grabe; Katrina L Grasby; Tomas Hajek; Laura K M Han; Sean N Hatton; Kevin Hilbert; Tiffany C Ho; Laurena Holleran; Georg Homuth; Norbert Hosten; Josselin Houenou; Iliyan Ivanov; Tianye Jia; Sinead Kelly; Marieke Klein; Jun Soo Kwon; Max A Laansma; Jeanne Leerssen; Ulrike Lueken; Abraham Nunes; Joseph O' Neill; Nils Opel; Fabrizio Piras; Federica Piras; Merel C Postema; Elena Pozzi; Natalia Shatokhina; Carles Soriano-Mas; Gianfranco Spalletta; Daqiang Sun; Alexander Teumer; Amanda K Tilot; Leonardo Tozzi; Celia van der Merwe; Eus J W Van Someren; Guido A van Wingen; Henry Völzke; Esther Walton; Lei Wang; Anderson M Winkler; Katharina Wittfeld; Margaret J Wright; Je-Yeon Yun; Guohao Zhang; Yanli Zhang-James; Bhim M Adhikari; Ingrid Agartz; Moji Aghajani; André Aleman; Robert R Althoff; Andre Altmann; Ole A Andreassen; David A Baron; Brenda L Bartnik-Olson; Janna Marie Bas-Hoogendam; Arielle R Baskin-Sommers; Carrie E Bearden; Laura A Berner; Premika S W Boedhoe; Rachel M Brouwer; Jan K Buitelaar; Karen Caeyenberghs; Charlotte A M Cecil; Ronald A Cohen; James H Cole; Patricia J Conrod; Stephane A De Brito; Sonja M C de Zwarte; Emily L Dennis; Sylvane Desrivieres; Danai Dima; Stefan Ehrlich; Carrie Esopenko; Graeme Fairchild; Simon E Fisher; Jean-Paul Fouche; Clyde Francks; Sophia Frangou; Barbara Franke; Hugh P Garavan; David C Glahn; Nynke A Groenewold; Tiril P Gurholt; Boris A Gutman; Tim Hahn; Ian H Harding; Dennis Hernaus; Derrek P Hibar; Frank G Hillary; Martine Hoogman; Hilleke E Hulshoff Pol; Maria Jalbrzikowski; George A Karkashadze; Eduard T Klapwijk; Rebecca C Knickmeyer; Peter Kochunov; Inga K Koerte; Xiang-Zhen Kong; Sook-Lei Liew; Alexander P Lin; Mark W Logue; Eileen Luders; Fabio Macciardi; Scott Mackey; Andrew R Mayer; Carrie R McDonald; Agnes B McMahon; Sarah E Medland; Gemma Modinos; Rajendra A Morey; Sven C Mueller; Pratik Mukherjee; Leyla Namazova-Baranova; Talia M Nir; Alexander Olsen; Peristera Paschou; Daniel S Pine; Fabrizio Pizzagalli; Miguel E Rentería; Jonathan D Rohrer; Philipp G Sämann; Lianne Schmaal; Gunter Schumann; Mark S Shiroishi; Sanjay M Sisodiya; Dirk J A Smit; Ida E Sønderby; Dan J Stein; Jason L Stein; Masoud Tahmasian; David F Tate; Jessica A Turner; Odile A van den Heuvel; Nic J A van der Wee; Ysbrand D van der Werf; Theo G M van Erp; Neeltje E M van Haren; Daan van Rooij; Laura S van Velzen; Ilya M Veer; Dick J Veltman; Julio E Villalon-Reina; Henrik Walter; Christopher D Whelan; Elisabeth A Wilde; Mojtaba Zarei; Vladimir Zelman
Journal:  Transl Psychiatry       Date:  2020-03-20       Impact factor: 7.989

  8 in total

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