Literature DB >> 29457738

Reproducibility and Feasibility of Strategies for Morphologic Assessment of Renal Biopsies Using the Nephrotic Syndrome Study Network Digital Pathology Scoring System.

Jarcy Zee, Jeffrey B Hodgin, Laura H Mariani, Joseph P Gaut, Matthew B Palmer, Serena M Bagnasco, Avi Z Rosenberg, Stephen M Hewitt, Lawrence B Holzman, Brenda W Gillespie, Laura Barisoni1.   

Abstract

Context Testing reproducibility is critical for the development of methodologies for morphologic assessment. Our previous study using the descriptor-based Nephrotic Syndrome Study Network Digital Pathology Scoring System (NDPSS) on glomerular images revealed variable reproducibility. Objective To test reproducibility and feasibility of alternative scoring strategies for digital morphologic assessment of glomeruli and explore use of alternative agreement statistics. Design The original NDPSS was modified (NDPSS1 and NDPSS2) to evaluate (1) independent scoring of each individual biopsy level, (2) use of continuous measures, (3) groupings of individual descriptors into classes and subclasses prior to scoring, and (4) indication of pathologists' confidence/uncertainty for any given score. Three and 5 pathologists scored 157 and 79 glomeruli using the NDPSS1 and NDPSS2, respectively. Agreement was tested using conventional (Cohen κ) and alternative (Gwet agreement coefficient 1 [AC1]) agreement statistics and compared with previously published data (original NDPSS). Results Overall, pathologists' uncertainty was low, favoring application of the Gwet AC1. Greater agreement was achieved using the Gwet AC1 compared with the Cohen κ across all scoring methodologies. Mean (standard deviation) differences in agreement estimates using the NDPSS1 and NDPSS2 compared with the single-level original NDPSS were -0.09 (0.17) and -0.17 (0.17), respectively. Using the Gwet AC1, 79% of the original NDPSS descriptors had good or excellent agreement. Pathologist feedback indicated the NDPSS1 and NDPSS2 were time-consuming. Conclusions The NDPSS1 and NDPSS2 increased pathologists' scoring burden without improving reproducibility. Use of alternative agreement statistics was strongly supported. We suggest using the original NDPSS on whole slide images for glomerular morphology assessment and for guiding future automated technologies.

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Year:  2018        PMID: 29457738      PMCID: PMC5946059          DOI: 10.5858/arpa.2017-0181-OA

Source DB:  PubMed          Journal:  Arch Pathol Lab Med        ISSN: 0003-9985            Impact factor:   5.534


  17 in total

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Authors:  P Furness
Journal:  Histopathology       Date:  2007-01       Impact factor: 5.087

2.  High agreement but low kappa: II. Resolving the paradoxes.

Authors:  D V Cicchetti; A R Feinstein
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3.  Reliability of whole slide images as a diagnostic modality for renal allograft biopsies.

Authors:  Kuang-Yu Jen; Jean L Olson; Sergey Brodsky; Xin J Zhou; Tibor Nadasdy; Zoltan G Laszik
Journal:  Hum Pathol       Date:  2012-11-28       Impact factor: 3.466

4.  Reproducibility of the NEPTUNE descriptor-based scoring system on whole-slide images and histologic and ultrastructural digital images.

Authors:  Laura Barisoni; Jonathan P Troost; Cynthia Nast; Serena Bagnasco; Carmen Avila-Casado; Jeffrey Hodgin; Matthew Palmer; Avi Rosenberg; Adil Gasim; Chrysta Liensziewski; Lino Merlino; Hui-Ping Chien; Anthony Chang; Shane M Meehan; Joseph Gaut; Peter Song; Lawrence Holzman; Debbie Gibson; Matthias Kretzler; Brenda W Gillespie; Stephen M Hewitt
Journal:  Mod Pathol       Date:  2016-04-22       Impact factor: 7.842

5.  Classification of thymic epithelial neoplasms is still a challenge to thoracic pathologists: a reproducibility study using digital microscopy.

Authors:  Hangjun Wang; Camelia S Sima; Mary Beth Beasley; Peter Illei; Anjali Saqi; Daisuke Nonaka; Kim R Geisinger; James Huang; Andre L Moreira
Journal:  Arch Pathol Lab Med       Date:  2014-05       Impact factor: 5.534

6.  Novel quantitative method to evaluate globotriaosylceramide inclusions in renal peritubular capillaries by virtual microscopy in patients with fabry disease.

Authors:  Laura Barisoni; J Charles Jennette; Robert Colvin; Sheela Sitaraman; Alexander Bragat; Jeff Castelli; Dan Walker; Pol Boudes
Journal:  Arch Pathol Lab Med       Date:  2012-07       Impact factor: 5.534

7.  The Oxford classification of IgA nephropathy: pathology definitions, correlations, and reproducibility.

Authors:  Ian S D Roberts; H Terence Cook; Stéphan Troyanov; Charles E Alpers; Alessandro Amore; Jonathan Barratt; Francois Berthoux; Stephen Bonsib; Jan A Bruijn; Daniel C Cattran; Rosanna Coppo; Vivette D'Agati; Giuseppe D'Amico; Steven Emancipator; Francesco Emma; John Feehally; Franco Ferrario; Fernando C Fervenza; Sandrine Florquin; Agnes Fogo; Colin C Geddes; Hermann-Josef Groene; Mark Haas; Andrew M Herzenberg; Prue A Hill; Ronald J Hogg; Stephen I Hsu; J Charles Jennette; Kensuke Joh; Bruce A Julian; Tetsuya Kawamura; Fernand M Lai; Lei-Shi Li; Philip K T Li; Zhi-Hong Liu; Bruce Mackinnon; Sergio Mezzano; F Paolo Schena; Yasuhiko Tomino; Patrick D Walker; Haiyan Wang; Jan J Weening; Nori Yoshikawa; Hong Zhang
Journal:  Kidney Int       Date:  2009-07-01       Impact factor: 10.612

Review 8.  Towards an integrated morphological and molecular WHO diagnosis of central nervous system tumors: a paradigm shift.

Authors:  Elisabeth J Rushing; Pieter Wesseling
Journal:  Curr Opin Neurol       Date:  2015-12       Impact factor: 5.710

9.  Intra-observer reproducibility of whole slide imaging for the primary diagnosis of breast needle biopsies.

Authors:  Carolina Reyes; Offiong F Ikpatt; Mehrdad Nadji; Richard J Cote
Journal:  J Pathol Inform       Date:  2014-02-25

10.  The Application of Digital Pathology to Improve Accuracy in Glomerular Enumeration in Renal Biopsies.

Authors:  Avi Z Rosenberg; Matthew Palmer; Lino Merlino; Jonathan P Troost; Adil Gasim; Serena Bagnasco; Carmen Avila-Casado; Duncan Johnstone; Jeffrey B Hodgin; Catherine Conway; Brenda W Gillespie; Cynthia C Nast; Laura Barisoni; Stephen M Hewitt
Journal:  PLoS One       Date:  2016-06-16       Impact factor: 3.240

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  11 in total

Review 1.  AI applications in renal pathology.

Authors:  Yuankai Huo; Ruining Deng; Quan Liu; Agnes B Fogo; Haichun Yang
Journal:  Kidney Int       Date:  2021-02-10       Impact factor: 10.612

2.  Kidney Biopsy Features Most Predictive of Clinical Outcomes in the Spectrum of Minimal Change Disease and Focal Segmental Glomerulosclerosis.

Authors:  Jarcy Zee; Qian Liu; Abigail R Smith; Jeffrey B Hodgin; Avi Rosenberg; Brenda W Gillespie; Lawrence B Holzman; Laura Barisoni; Laura H Mariani
Journal:  J Am Soc Nephrol       Date:  2022-05-17       Impact factor: 14.978

3.  Ultrastructural Characterization of Proteinuric Patients Predicts Clinical Outcomes.

Authors:  Virginie Royal; Jarcy Zee; Qian Liu; Carmen Avila-Casado; Abigail R Smith; Gang Liu; Laura H Mariani; Stephen Hewitt; Lawrence B Holzman; Brenda W Gillespie; Jeffrey B Hodgin; Laura Barisoni
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4.  Assessment of a computerized quantitative quality control tool for whole slide images of kidney biopsies.

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5.  Clinicopathologic predictors of renal outcomes in light chain cast nephropathy: a multicenter retrospective study.

Authors:  Virginie Royal; Nelson Leung; Stéphan Troyanov; Samih H Nasr; Laure Écotière; Richard LeBlanc; Benjamin A Adam; Andrea Angioi; Mariam P Alexander; Anna Maria Asunis; Antonella Barreca; Paola Bianco; Camille Cohen; Maria E Drosou; Huma Fatima; Roberta Fenoglio; François Gougeon; Jean-Michel Goujon; Guillermo A Herrera; Bertrand Knebelmann; Nicola Lepori; Francesca Maletta; Rita Manso; Shveta S Motwani; Antonello Pani; Marion Rabant; Helmut G Rennke; Dario Rocatello; Frida Rosenblum; Paul W Sanders; Afonso Santos; Karina Soto; Banu Sis; Guy Touchard; Christopher P Venner; Frank Bridoux
Journal:  Blood       Date:  2020-05-21       Impact factor: 25.476

6.  CureGN Study Rationale, Design, and Methods: Establishing a Large Prospective Observational Study of Glomerular Disease.

Authors:  Laura H Mariani; Andrew S Bomback; Pietro A Canetta; Michael F Flessner; Margaret Helmuth; Michelle A Hladunewich; Jonathan J Hogan; Krzysztof Kiryluk; Patrick H Nachman; Cynthia C Nast; Michelle N Rheault; Dana V Rizk; Howard Trachtman; Scott E Wenderfer; Corinna Bowers; Peg Hill-Callahan; Maddalena Marasa; Caroline J Poulton; Adelaide Revell; Suzanne Vento; Laura Barisoni; Dan Cattran; Vivette D'Agati; J Charles Jennette; Jon B Klein; Louis-Philippe Laurin; Katherine Twombley; Ronald J Falk; Ali G Gharavi; Brenda W Gillespie; Debbie S Gipson; Larry A Greenbaum; Lawrence B Holzman; Matthias Kretzler; Bruce Robinson; William E Smoyer; Lisa M Guay-Woodford
Journal:  Am J Kidney Dis       Date:  2018-11-09       Impact factor: 11.072

7.  Homogeneity score test of AC1 statistics and estimation of common AC1 in multiple or stratified inter-rater agreement studies.

Authors:  Chikara Honda; Tetsuji Ohyama
Journal:  BMC Med Res Methodol       Date:  2020-02-05       Impact factor: 4.615

Review 8.  Artificial intelligence driven next-generation renal histomorphometry.

Authors:  Briana A Santo; Avi Z Rosenberg; Pinaki Sarder
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Review 9.  Digital pathology and computational image analysis in nephropathology.

Authors:  Laura Barisoni; Kyle J Lafata; Stephen M Hewitt; Anant Madabhushi; Ulysses G J Balis
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10.  Biobanking for glomerular diseases: a study design and protocol for KOrea Renal biobank NEtwoRk System TOward NExt-generation analysis (KORNERSTONE).

Authors:  Eunjeong Kang; Yaerim Kim; Yong Chul Kim; Eunyoung Kim; Nankyoung Lee; Yeonghui Kim; Soojin Lee; Seungyeup Han; Misun Choe; Jin Ho Hwang; Sunhwa Lee; Ji In Park; Jung Tak Park; Beom Jin Lim; Jung Pyo Lee; Jung Nam An; Dong-Ryeol Ryu; Jung-Hyun Kim; Hee Gyung Kang; Hyun Soon Lee; Kyung Chul Moon; Kwon Wook Joo; Kook-Hwan Oh; Seung Seok Han; Hajeong Lee; Dong Ki Kim
Journal:  BMC Nephrol       Date:  2020-08-26       Impact factor: 2.388

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