Literature DB >> 32205581

Artificial intelligence driven next-generation renal histomorphometry.

Briana A Santo1, Avi Z Rosenberg, Pinaki Sarder.   

Abstract

PURPOSE OF REVIEW: Successful integration of artificial intelligence into extant clinical workflows is contingent upon a number of factors including clinician comprehension and interpretation of computer vision. This article discusses how image analysis and machine learning have enabled comprehensive characterization of kidney morphology for development of automated diagnostic and prognostic renal pathology applications. RECENT
FINDINGS: The primordial digital pathology informatics work employed classical image analysis and machine learning to prognosticate renal disease. Although this classical approach demonstrated tremendous potential, subsequent advancements in hardware technology rendered artificial neural networks '(ANNs) the method of choice for machine vision in computational pathology'. Offering rapid and reproducible detection, characterization and classification of kidney morphology, ANNs have facilitated the development of diagnostic and prognostic applications. In addition, modern machine learning with ANNs has revealed novel biomarkers in kidney disease, demonstrating the potential for machine vision to elucidate novel pathologic mechanisms beyond extant clinical knowledge.
SUMMARY: Despite the revolutionary developments potentiated by modern machine learning, several challenges remain, including data quality control and curation, image annotation and ontology, integration of multimodal data and interpretation of machine vision or 'opening the black box'. Resolution of these challenges will not only revolutionize diagnostic pathology but also pave the way for precision medicine and integration of artificial intelligence in the process of care.

Entities:  

Mesh:

Year:  2020        PMID: 32205581      PMCID: PMC7189787          DOI: 10.1097/MNH.0000000000000598

Source DB:  PubMed          Journal:  Curr Opin Nephrol Hypertens        ISSN: 1062-4821            Impact factor:   3.416


  40 in total

Review 1.  Telepathology: current status and future prospects in diagnostic histopathology.

Authors:  S S Cross; T Dennis; R D Start
Journal:  Histopathology       Date:  2002-08       Impact factor: 5.087

2.  Can we open the black box of AI?

Authors:  Davide Castelvecchi
Journal:  Nature       Date:  2016-10-06       Impact factor: 49.962

3.  Interstitial fibrosis scored on whole-slide digital imaging of kidney biopsies is a predictor of outcome in proteinuric glomerulopathies.

Authors:  Laura H Mariani; Sebastian Martini; Laura Barisoni; Pietro A Canetta; Jonathan P Troost; Jeffrey B Hodgin; Matthew Palmer; Avi Z Rosenberg; Kevin V Lemley; Hui-Ping Chien; Jarcy Zee; Abigail Smith; Gerald B Appel; Howard Trachtman; Stephen M Hewitt; Matthias Kretzler; Serena M Bagnasco
Journal:  Nephrol Dial Transplant       Date:  2018-02-01       Impact factor: 5.992

Review 4.  Histo-genomics: digital pathology at the forefront of precision medicine.

Authors:  Ivraym Barsoum; Eriny Tawedrous; Hala Faragalla; George M Yousef
Journal:  Diagnosis (Berl)       Date:  2019-08-27

5.  Reproducibility and Feasibility of Strategies for Morphologic Assessment of Renal Biopsies Using the Nephrotic Syndrome Study Network Digital Pathology Scoring System.

Authors:  Jarcy Zee; Jeffrey B Hodgin; Laura H Mariani; Joseph P Gaut; Matthew B Palmer; Serena M Bagnasco; Avi Z Rosenberg; Stephen M Hewitt; Lawrence B Holzman; Brenda W Gillespie; Laura Barisoni
Journal:  Arch Pathol Lab Med       Date:  2018-02-19       Impact factor: 5.534

Review 6.  Artificial intelligence in digital pathology - new tools for diagnosis and precision oncology.

Authors:  Kaustav Bera; Kurt A Schalper; David L Rimm; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Nat Rev Clin Oncol       Date:  2019-08-09       Impact factor: 66.675

7.  Clinical-grade computational pathology using weakly supervised deep learning on whole slide images.

Authors:  Gabriele Campanella; Matthew G Hanna; Luke Geneslaw; Allen Miraflor; Vitor Werneck Krauss Silva; Klaus J Busam; Edi Brogi; Victor E Reuter; David S Klimstra; Thomas J Fuchs
Journal:  Nat Med       Date:  2019-07-15       Impact factor: 53.440

8.  Review of the current state of whole slide imaging in pathology.

Authors:  Liron Pantanowitz; Paul N Valenstein; Andrew J Evans; Keith J Kaplan; John D Pfeifer; David C Wilbur; Laura C Collins; Terence J Colgan
Journal:  J Pathol Inform       Date:  2011-08-13

9.  Digital pathology imaging as a novel platform for standardization and globalization of quantitative nephropathology.

Authors:  Laura Barisoni; Charlotte Gimpel; Renate Kain; Arvydas Laurinavicius; Gloria Bueno; Caihong Zeng; Zhihong Liu; Franz Schaefer; Matthias Kretzler; Lawrence B Holzman; Stephen M Hewitt
Journal:  Clin Kidney J       Date:  2017-02-18

10.  Design of the Nephrotic Syndrome Study Network (NEPTUNE) to evaluate primary glomerular nephropathy by a multidisciplinary approach.

Authors:  Crystal A Gadegbeku; Debbie S Gipson; Lawrence B Holzman; Akinlolu O Ojo; Peter X K Song; Laura Barisoni; Matthew G Sampson; Jeffrey B Kopp; Kevin V Lemley; Peter J Nelson; Chrysta C Lienczewski; Sharon G Adler; Gerald B Appel; Daniel C Cattran; Michael J Choi; Gabriel Contreras; Katherine M Dell; Fernando C Fervenza; Keisha L Gibson; Larry A Greenbaum; Joel D Hernandez; Stephen M Hewitt; Sangeeta R Hingorani; Michelle Hladunewich; Marie C Hogan; Susan L Hogan; Frederick J Kaskel; John C Lieske; Kevin E C Meyers; Patrick H Nachman; Cynthia C Nast; Alicia M Neu; Heather N Reich; John R Sedor; Christine B Sethna; Howard Trachtman; Katherine R Tuttle; Olga Zhdanova; Gastòn E Zilleruelo; Matthias Kretzler
Journal:  Kidney Int       Date:  2013-01-16       Impact factor: 10.612

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  10 in total

Review 1.  AI applications in renal pathology.

Authors:  Yuankai Huo; Ruining Deng; Quan Liu; Agnes B Fogo; Haichun Yang
Journal:  Kidney Int       Date:  2021-02-10       Impact factor: 10.612

2.  Automatic Evaluation of Histological Prognostic Factors Using Two Consecutive Convolutional Neural Networks on Kidney Samples.

Authors:  Elise Marechal; Adrien Jaugey; Georges Tarris; Michel Paindavoine; Jean Seibel; Laurent Martin; Mathilde Funes de la Vega; Thomas Crepin; Didier Ducloux; Gilbert Zanetta; Sophie Felix; Pierre Henri Bonnot; Florian Bardet; Luc Cormier; Jean-Michel Rebibou; Mathieu Legendre
Journal:  Clin J Am Soc Nephrol       Date:  2021-12-03       Impact factor: 8.237

3.  Glo-In-One: holistic glomerular detection, segmentation, and lesion characterization with large-scale web image mining.

Authors:  Tianyuan Yao; Yuzhe Lu; Jun Long; Aadarsh Jha; Zheyu Zhu; Zuhayr Asad; Haichun Yang; Agnes B Fogo; Yuankai Huo
Journal:  J Med Imaging (Bellingham)       Date:  2022-06-20

4.  PodoCount: A Robust, Fully Automated, Whole-Slide Podocyte Quantification Tool.

Authors:  Briana A Santo; Darshana Govind; Parnaz Daneshpajouhnejad; Xiaoping Yang; Xiaoxin X Wang; Komuraiah Myakala; Bryce A Jones; Moshe Levi; Jeffrey B Kopp; Teruhiko Yoshida; Laura J Niedernhofer; David Manthey; Kyung Chul Moon; Seung Seok Han; Jarcy Zee; Avi Z Rosenberg; Pinaki Sarder
Journal:  Kidney Int Rep       Date:  2022-06-03

Review 5.  Artificial intelligence and algorithmic computational pathology: an introduction with renal allograft examples.

Authors:  Alton B Farris; Juan Vizcarra; Mohamed Amgad; Lee A D Cooper; David Gutman; Julien Hogan
Journal:  Histopathology       Date:  2021-03-08       Impact factor: 5.087

6.  User friendly, cloud based, whole slide image segmentation.

Authors:  Brendon Lutnick; Avinash Kammardi Shashiprakash; David Manthey; Pinaki Sarder
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2021-02-15

7.  Deep-Learning-Driven Quantification of Interstitial Fibrosis in Digitized Kidney Biopsies.

Authors:  Yi Zheng; Clarissa A Cassol; Saemi Jung; Divya Veerapaneni; Vipul C Chitalia; Kevin Y M Ren; Shubha S Bellur; Peter Boor; Laura M Barisoni; Sushrut S Waikar; Margrit Betke; Vijaya B Kolachalama
Journal:  Am J Pathol       Date:  2021-05-23       Impact factor: 5.770

8.  Artificial intelligence: is there a potential role in nephropathology?

Authors:  Meyke Hermsen; Bart Smeets; Luuk Hilbrands; Jeroen van der Laak
Journal:  Nephrol Dial Transplant       Date:  2022-02-25       Impact factor: 5.992

9.  A user-friendly tool for cloud-based whole slide image segmentation with examples from renal histopathology.

Authors:  Brendon Lutnick; David Manthey; Jan U Becker; Brandon Ginley; Katharina Moos; Jonathan E Zuckerman; Luis Rodrigues; Alexander J Gallan; Laura Barisoni; Charles E Alpers; Xiaoxin X Wang; Komuraiah Myakala; Bryce A Jones; Moshe Levi; Jeffrey B Kopp; Teruhiko Yoshida; Jarcy Zee; Seung Seok Han; Sanjay Jain; Avi Z Rosenberg; Kuang Yu Jen; Pinaki Sarder
Journal:  Commun Med (Lond)       Date:  2022-08-19

10.  Development and evaluation of deep learning-based segmentation of histologic structures in the kidney cortex with multiple histologic stains.

Authors:  Catherine P Jayapandian; Yijiang Chen; Andrew R Janowczyk; Matthew B Palmer; Clarissa A Cassol; Miroslav Sekulic; Jeffrey B Hodgin; Jarcy Zee; Stephen M Hewitt; John O'Toole; Paula Toro; John R Sedor; Laura Barisoni; Anant Madabhushi
Journal:  Kidney Int       Date:  2020-08-22       Impact factor: 10.612

  10 in total

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