Literature DB >> 29440392

Structure, function, and mechanism of the core circadian clock in cyanobacteria.

Jeffrey A Swan1, Susan S Golden2,3, Andy LiWang3,4, Carrie L Partch5,3.   

Abstract

Circadian rhythms enable cells and organisms to coordinate their physiology with the cyclic environmental changes that come as a result of Earth's light/dark cycles. Cyanobacteria make use of a post-translational oscillator to maintain circadian rhythms, and this elegant system has become an important model for circadian timekeeping mechanisms. Composed of three proteins, the KaiABC system undergoes an oscillatory biochemical cycle that provides timing cues to achieve a 24-h molecular clock. Together with the input/output proteins SasA, CikA, and RpaA, these six gene products account for the timekeeping, entrainment, and output signaling functions in cyanobacterial circadian rhythms. This Minireview summarizes the current structural, functional and mechanistic insights into the cyanobacterial circadian clock.
© 2018 by The American Society for Biochemistry and Molecular Biology, Inc.

Keywords:  ATPases associated with diverse cellular activities (AAA); bacterial protein kinase; bacterial signal transduction; circadian rhythm; crystallography; nuclear magnetic resonance (NMR)

Mesh:

Substances:

Year:  2018        PMID: 29440392      PMCID: PMC5892564          DOI: 10.1074/jbc.TM117.001433

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  88 in total

1.  Visualizing a circadian clock protein: crystal structure of KaiC and functional insights.

Authors:  Rekha Pattanayek; Jimin Wang; Tetsuya Mori; Yao Xu; Carl Hirschie Johnson; Martin Egli
Journal:  Mol Cell       Date:  2004-08-13       Impact factor: 17.970

2.  LdpA: a component of the circadian clock senses redox state of the cell.

Authors:  Natalia B Ivleva; Matthew R Bramlett; Paul A Lindahl; Susan S Golden
Journal:  EMBO J       Date:  2005-03-10       Impact factor: 11.598

3.  An allosteric model of circadian KaiC phosphorylation.

Authors:  Jeroen S van Zon; David K Lubensky; Pim R H Altena; Pieter Rein ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-25       Impact factor: 11.205

4.  A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria.

Authors:  Taeko Nishiwaki; Yoshinori Satomi; Yohko Kitayama; Kazuki Terauchi; Reiko Kiyohara; Toshifumi Takao; Takao Kondo
Journal:  EMBO J       Date:  2007-08-23       Impact factor: 11.598

Review 5.  Timing the day: what makes bacterial clocks tick?

Authors:  Carl Hirschie Johnson; Chi Zhao; Yao Xu; Tetsuya Mori
Journal:  Nat Rev Microbiol       Date:  2017-02-20       Impact factor: 60.633

6.  Three major output pathways from the KaiABC-based oscillator cooperate to generate robust circadian kaiBC expression in cyanobacteria.

Authors:  Yasuhito Taniguchi; Naoki Takai; Mitsunori Katayama; Takao Kondo; Tokitaka Oyama
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-28       Impact factor: 11.205

Review 7.  Introduction to Chronobiology.

Authors:  Sandra J Kuhlman; L Michon Craig; Jeanne F Duffy
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-09-04       Impact factor: 10.005

8.  Structural basis of the day-night transition in a bacterial circadian clock.

Authors:  Roger Tseng; Nicolette F Goularte; Archana Chavan; Jansen Luu; Susan E Cohen; Yong-Gang Chang; Joel Heisler; Sheng Li; Alicia K Michael; Sarvind Tripathi; Susan S Golden; Andy LiWang; Carrie L Partch
Journal:  Science       Date:  2017-03-16       Impact factor: 47.728

Review 9.  Molecular Mechanisms of Two-Component Signal Transduction.

Authors:  Christopher P Zschiedrich; Victoria Keidel; Hendrik Szurmant
Journal:  J Mol Biol       Date:  2016-08-09       Impact factor: 5.469

10.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

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  25 in total

1.  Genome-wide fitness assessment during diurnal growth reveals an expanded role of the cyanobacterial circadian clock protein KaiA.

Authors:  David G Welkie; Benjamin E Rubin; Yong-Gang Chang; Spencer Diamond; Scott A Rifkin; Andy LiWang; Susan S Golden
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-10       Impact factor: 11.205

2.  Introduction to the Thematic Minireview Series: Green biological chemistry.

Authors:  Joseph M Jez
Journal:  J Biol Chem       Date:  2018-02-14       Impact factor: 5.157

Review 3.  The Microbiome as a Circadian Coordinator of Metabolism.

Authors:  Yelina Alvarez; Lila G Glotfelty; Niklas Blank; Lenka Dohnalová; Christoph A Thaiss
Journal:  Endocrinology       Date:  2020-06-01       Impact factor: 4.736

4.  The endogenous redox rhythm is controlled by a central circadian oscillator in cyanobacterium Synechococcus elongatus PCC7942.

Authors:  Kenya Tanaka; Masahito Ishikawa; Masahiro Kaneko; Kazuhide Kamiya; Souichiro Kato; Shuji Nakanishi
Journal:  Photosynth Res       Date:  2019-09-04       Impact factor: 3.573

5.  Principles of rhythmicity emerging from cyanobacteria.

Authors:  Susan S Golden
Journal:  Eur J Neurosci       Date:  2019-06-17       Impact factor: 3.386

Review 6.  Iterative Metaplasticity Across Timescales: How Circadian, Ultradian, and Infradian Rhythms Modulate Memory Mechanisms.

Authors:  Matthew J Hartsock; Helen K Strnad; Robert L Spencer
Journal:  J Biol Rhythms       Date:  2021-11-15       Impact factor: 3.649

Review 7.  Circadian rhythms in infectious diseases and symbiosis.

Authors:  Filipa Rijo-Ferreira; Joseph S Takahashi
Journal:  Semin Cell Dev Biol       Date:  2021-10-06       Impact factor: 7.499

Review 8.  Circadian Interactomics: How Research Into Protein-Protein Interactions Beyond the Core Clock Has Influenced the Model of Circadian Timekeeping.

Authors:  Alexander E Mosier; Jennifer M Hurley
Journal:  J Biol Rhythms       Date:  2021-05-31       Impact factor: 3.182

Review 9.  Timeless in animal circadian clocks and beyond.

Authors:  Yao D Cai; Joanna C Chiu
Journal:  FEBS J       Date:  2021-10-26       Impact factor: 5.622

Review 10.  Orchestration of Circadian Timing by Macromolecular Protein Assemblies.

Authors:  Carrie L Partch
Journal:  J Mol Biol       Date:  2020-01-13       Impact factor: 5.469

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