Literature DB >> 31945377

Orchestration of Circadian Timing by Macromolecular Protein Assemblies.

Carrie L Partch1.   

Abstract

Genetically encoded biological clocks are found broadly throughout eukaryotes and in cyanobacteria, where they generate circadian (about a day) rhythms that allow organisms to anticipate regular environmental changes and align their physiology and behavior with Earth's daily light/dark cycle. In recent years, many have sought to expand our biochemical and structural understanding of the clock proteins that constitute the molecular "cogs" of these biological clocks. These new studies are beginning to reveal how macromolecular assemblies of dedicated clock proteins form and evolve to contribute to the generation of clocks that function over the timescale of a day. This review will highlight structural and biochemical studies that provide important insight into the molecular mechanisms of cyanobacterial and vertebrate animal clocks. Collectively, these studies demonstrate emerging biochemical properties that appear to be shared by these different clocks, suggesting that there may be some conservation in the regulation and assembly of circadian macromolecular assemblies.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  activation; competition; cooperativity; repression; sequestration

Mesh:

Substances:

Year:  2020        PMID: 31945377      PMCID: PMC8694095          DOI: 10.1016/j.jmb.2019.12.046

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  198 in total

1.  Visualizing a circadian clock protein: crystal structure of KaiC and functional insights.

Authors:  Rekha Pattanayek; Jimin Wang; Tetsuya Mori; Yao Xu; Carl Hirschie Johnson; Martin Egli
Journal:  Mol Cell       Date:  2004-08-13       Impact factor: 17.970

2.  CikA Modulates the Effect of KaiA on the Period of the Circadian Oscillation in KaiC Phosphorylation.

Authors:  Manpreet Kaur; Amy Ng; Pyonghwa Kim; Casey Diekman; Yong-Ick Kim
Journal:  J Biol Rhythms       Date:  2019-02-13       Impact factor: 3.182

3.  Mammalian Cry1 and Cry2 are essential for maintenance of circadian rhythms.

Authors:  G T van der Horst; M Muijtjens; K Kobayashi; R Takano; S Kanno; M Takao; J de Wit; A Verkerk; A P Eker; D van Leenen; R Buijs; D Bootsma; J H Hoeijmakers; A Yasui
Journal:  Nature       Date:  1999-04-15       Impact factor: 49.962

4.  Control of mammalian circadian rhythm by CKIepsilon-regulated proteasome-mediated PER2 degradation.

Authors:  Erik J Eide; Margaret F Woolf; Heeseog Kang; Peter Woolf; William Hurst; Fernando Camacho; Erica L Vielhaber; Andrew Giovanni; David M Virshup
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

5.  PERIOD1-associated proteins modulate the negative limb of the mammalian circadian oscillator.

Authors:  Steven A Brown; Juergen Ripperger; Sebastian Kadener; Fabienne Fleury-Olela; Francis Vilbois; Michael Rosbash; Ueli Schibler
Journal:  Science       Date:  2005-04-29       Impact factor: 47.728

6.  A molecular mechanism for circadian clock negative feedback.

Authors:  Hao A Duong; Maria S Robles; Darko Knutti; Charles J Weitz
Journal:  Science       Date:  2011-06-17       Impact factor: 47.728

7.  Structural and mechanistic insights into the interaction of the circadian transcription factor BMAL1 with the KIX domain of the CREB-binding protein.

Authors:  Archit Garg; Roberto Orru; Weixiang Ye; Ute Distler; Jeremy E Chojnacki; Maja Köhn; Stefan Tenzer; Carsten Sönnichsen; Eva Wolf
Journal:  J Biol Chem       Date:  2019-09-12       Impact factor: 5.157

Review 8.  A period without PER: understanding 24-hour rhythms without classic transcription and translation feedback loops.

Authors:  Arthur Millius; Koji L Ode; Hiroki R Ueda
Journal:  F1000Res       Date:  2019-04-16

9.  Role of structural plasticity in signal transduction by the cryptochrome blue-light photoreceptor.

Authors:  Carrie L Partch; Michael W Clarkson; Sezgin Ozgür; Andrew L Lee; Aziz Sancar
Journal:  Biochemistry       Date:  2005-03-15       Impact factor: 3.162

10.  Translational switching of Cry1 protein expression confers reversible control of circadian behavior in arrhythmic Cry-deficient mice.

Authors:  Elizabeth S Maywood; Thomas S Elliott; Andrew P Patton; Toke P Krogager; Johanna E Chesham; Russell J Ernst; Václav Beránek; Marco Brancaccio; Jason W Chin; Michael H Hastings
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-28       Impact factor: 11.205

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  16 in total

1.  Molecular mechanism of the repressive phase of the mammalian circadian clock.

Authors:  Xuemei Cao; Yanyan Yang; Christopher P Selby; Zhenxing Liu; Aziz Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-21       Impact factor: 11.205

2.  Regulation mechanisms of the dual ATPase in KaiC.

Authors:  Yoshihiko Furuike; Atsushi Mukaiyama; Shin-Ichi Koda; Damien Simon; Dongyan Ouyang; Kumiko Ito-Miwa; Shinji Saito; Eiki Yamashita; Taeko Nishiwaki-Ohkawa; Kazuki Terauchi; Takao Kondo; Shuji Akiyama
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-04       Impact factor: 12.779

Review 3.  New insights into non-transcriptional regulation of mammalian core clock proteins.

Authors:  Priya Crosby; Carrie L Partch
Journal:  J Cell Sci       Date:  2020-09-15       Impact factor: 5.285

4.  Circadian regulation of cardiac muscle function and protein degradation.

Authors:  Seung-Hee Yoo
Journal:  Chronobiol Int       Date:  2021-09-14       Impact factor: 2.877

Review 5.  Biochemical mechanisms of period control within the mammalian circadian clock.

Authors:  Jonathan M Philpott; Megan R Torgrimson; Rachel L Harold; Carrie L Partch
Journal:  Semin Cell Dev Biol       Date:  2021-04-28       Impact factor: 7.499

6.  Evolution of the repression mechanisms in circadian clocks.

Authors:  Jonathan Tyler; Yining Lu; Jay Dunlap; Daniel B Forger
Journal:  Genome Biol       Date:  2022-01-10       Impact factor: 13.583

7.  A high-throughput predictive method for sequence-similar fold switchers.

Authors:  Allen K Kim; Loren L Looger; Lauren L Porter
Journal:  Biopolymers       Date:  2021-01-19       Impact factor: 2.240

Review 8.  Functional and Regulatory Roles of Fold-Switching Proteins.

Authors:  Allen K Kim; Lauren L Porter
Journal:  Structure       Date:  2020-11-10       Impact factor: 5.006

Review 9.  Intrinsic disorder is an essential characteristic of components in the conserved circadian circuit.

Authors:  Jacqueline F Pelham; Jay C Dunlap; Jennifer M Hurley
Journal:  Cell Commun Signal       Date:  2020-11-11       Impact factor: 5.712

10.  TRITHORAX-dependent arginine methylation of HSP68 mediates circadian repression by PERIOD in the monarch butterfly.

Authors:  Ying Zhang; Samantha E Iiams; Jerome S Menet; Paul E Hardin; Christine Merlin
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-25       Impact factor: 12.779

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