Literature DB >> 15304218

Visualizing a circadian clock protein: crystal structure of KaiC and functional insights.

Rekha Pattanayek1, Jimin Wang, Tetsuya Mori, Yao Xu, Carl Hirschie Johnson, Martin Egli.   

Abstract

Circadian (daily) biological clocks express characteristics that are difficult to explain by known biochemical mechanisms, and will ultimately require characterizing the structures, functions, and interactions of their molecular components. KaiC is an essential circadian protein in cyanobacteria that forms the core of the KaiABC clock protein complex. We report the crystal structure of the KaiC homohexameric complex at 2.8 A resolution. The structure resembles a double doughnut with a central pore that is partially sealed at one end. The crystal structure reveals ATP binding, inter-subunit organization, a scaffold for Kai-protein complex formation, the location of critical KaiC mutations, and evolutionary relationships to other proteins. A key auto-phosphorylation site on KaiC (T432) is identified from the crystal structure, and mutation of this residue abolishes circadian rhythmicity. The crystal structure of KaiC will be essential for understanding this circadian clockwork and for establishing its links to global gene expression.

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Year:  2004        PMID: 15304218     DOI: 10.1016/j.molcel.2004.07.013

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  88 in total

1.  Meshing the gears of the cyanobacterial circadian clock.

Authors:  Susan S Golden
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-14       Impact factor: 11.205

2.  Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses.

Authors:  Yao Xu; Tetsuya Mori; Rekha Pattanayek; Sabuj Pattanayek; Martin Egli; Carl Hirschie Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-03       Impact factor: 11.205

Review 3.  Structural and dynamic aspects of protein clocks: how can they be so slow and stable?

Authors:  Shuji Akiyama
Journal:  Cell Mol Life Sci       Date:  2012-01-25       Impact factor: 9.261

4.  Circadian autodephosphorylation of cyanobacterial clock protein KaiC occurs via formation of ATP as intermediate.

Authors:  Taeko Nishiwaki; Takao Kondo
Journal:  J Biol Chem       Date:  2012-04-09       Impact factor: 5.157

5.  The roles of the dimeric and tetrameric structures of the clock protein KaiB in the generation of circadian oscillations in cyanobacteria.

Authors:  Reiko Murakami; Risa Mutoh; Ryo Iwase; Yukio Furukawa; Katsumi Imada; Kiyoshi Onai; Megumi Morishita; So Yasui; Kentaro Ishii; Jonathan Orville Valencia Swain; Tatsuya Uzumaki; Keiichi Namba; Masahiro Ishiura
Journal:  J Biol Chem       Date:  2012-06-21       Impact factor: 5.157

6.  Intermolecular associations determine the dynamics of the circadian KaiABC oscillator.

Authors:  Ximing Qin; Mark Byrne; Tetsuya Mori; Ping Zou; Dewight R Williams; Hassane McHaourab; Carl Hirschie Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-02       Impact factor: 11.205

7.  Tracking and visualizing the circadian ticking of the cyanobacterial clock protein KaiC in solution.

Authors:  Yoriko Murayama; Atsushi Mukaiyama; Keiko Imai; Yasuhiro Onoue; Akina Tsunoda; Atsushi Nohara; Tatsuro Ishida; Yuichiro Maéda; Kazuki Terauchi; Takao Kondo; Shuji Akiyama
Journal:  EMBO J       Date:  2010-11-26       Impact factor: 11.598

8.  Nature of KaiB-KaiC binding in the cyanobacterial circadian oscillator.

Authors:  Rekha Pattanayek; Kirthi Kiran Yadagiri; Melanie D Ohi; Martin Egli
Journal:  Cell Cycle       Date:  2013-02-06       Impact factor: 4.534

9.  An arginine tetrad as mediator of input-dependent and input-independent ATPases in the clock protein KaiC.

Authors:  Rekha Pattanayek; Yao Xu; Aashish Lamichhane; Carl H Johnson; Martin Egli
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-04-30

10.  Active output state of the Synechococcus Kai circadian oscillator.

Authors:  Mark L Paddock; Joseph S Boyd; Dawn M Adin; Susan S Golden
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

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