Literature DB >> 29385304

Cytochrome-P450-Induced Ordering of Microsomal Membranes Modulates Affinity for Drugs.

Carlo Barnaba1, Bikash Ranjan Sahoo1, Thirupathi Ravula1, Ilce G Medina-Meza2, Sang-Choul Im3, G M Anantharamaiah4, Lucy Waskell3, Ayyalusamy Ramamoorthy1.   

Abstract

Although membrane environment is known to boost drug metabolism by mammalian cytochrome P450s, the factors that stabilize the structural folding and enhance protein function are unclear. In this study, we use peptide-based lipid nanodiscs to "trap" the lipid boundaries of microsomal cytochrome P450 2B4. We report the first evidence that CYP2B4 is able to induce the formation of raft domains in a biomimetic compound of the endoplasmic reticulum. NMR experiments were used to identify and quantitatively determine the lipids present in nanodiscs. A combination of biophysical experiments and molecular dynamics simulations revealed a sphingomyelin binding region in CYP2B4. The protein-induced lipid raft formation increased the thermal stability of P450 and dramatically altered ligand binding kinetics of the hydrophilic ligand BHT. These results unveil membrane/protein dynamics that contribute to the delicate mechanism of redox catalysis in lipid membrane.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  biophysics; hemeproteins; lipids; membranes; nanodiscs

Mesh:

Substances:

Year:  2018        PMID: 29385304      PMCID: PMC6289274          DOI: 10.1002/anie.201713167

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  33 in total

Review 1.  Structure and chemistry of cytochrome P450.

Authors:  Ilia G Denisov; Thomas M Makris; Stephen G Sligar; Ilme Schlichting
Journal:  Chem Rev       Date:  2005-06       Impact factor: 60.622

2.  Detergent-resistant membranes should not be identified with membrane rafts.

Authors:  Dov Lichtenberg; Félix M Goñi; Heiko Heerklotz
Journal:  Trends Biochem Sci       Date:  2005-08       Impact factor: 13.807

3.  Characterization of the Lipid-Binding Site of Equinatoxin II by NMR and Molecular Dynamics Simulation.

Authors:  Daniel K Weber; Shenggen Yao; Nejc Rojko; Gregor Anderluh; Terry P Lybrand; Matthew T Downton; John Wagner; Frances Separovic
Journal:  Biophys J       Date:  2015-04-21       Impact factor: 4.033

4.  Reconstitution of the Cytb5-CytP450 Complex in Nanodiscs for Structural Studies using NMR Spectroscopy.

Authors:  Meng Zhang; Rui Huang; Rose Ackermann; Sang-Choul Im; Lucy Waskell; Anna Schwendeman; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-29       Impact factor: 15.336

5.  Single-Protein Tracking Reveals That NADPH Mediates the Insertion of Cytochrome P450 Reductase into a Biomimetic of the Endoplasmic Reticulum.

Authors:  Carlo Barnaba; Michael J Martinez; Evan Taylor; Adam O Barden; James A Brozik
Journal:  J Am Chem Soc       Date:  2017-04-06       Impact factor: 15.419

6.  Dissociation Constants of Cytochrome P450 2C9/Cytochrome P450 Reductase Complexes in a Lipid Bilayer Membrane Depend on NADPH: A Single-Protein Tracking Study.

Authors:  Carlo Barnaba; Evan Taylor; James A Brozik
Journal:  J Am Chem Soc       Date:  2017-12-04       Impact factor: 15.419

7.  Mechanism of drug-drug interactions mediated by human cytochrome P450 CYP3A4 monomer.

Authors:  Ilia G Denisov; Yelena V Grinkova; Javier L Baylon; Emad Tajkhorshid; Stephen G Sligar
Journal:  Biochemistry       Date:  2015-03-25       Impact factor: 3.162

8.  Structural and thermodynamic consequences of 1-(4-chlorophenyl)imidazole binding to cytochrome P450 2B4.

Authors:  Yonghong Zhao; Ling Sun; B K Muralidhara; Santosh Kumar; Mark A White; C David Stout; James R Halpert
Journal:  Biochemistry       Date:  2007-09-22       Impact factor: 3.162

Review 9.  The systematic analysis of protein-lipid interactions comes of age.

Authors:  Antoine-Emmanuel Saliba; Ivana Vonkova; Anne-Claude Gavin
Journal:  Nat Rev Mol Cell Biol       Date:  2015-10-28       Impact factor: 94.444

Review 10.  The catalytic function of cytochrome P450 is entwined with its membrane-bound nature.

Authors:  Carlo Barnaba; Katherine Gentry; Nirupama Sumangala; Ayyalusamy Ramamoorthy
Journal:  F1000Res       Date:  2017-05-09
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  13 in total

1.  Effect of polymer charge on functional reconstitution of membrane proteins in polymer nanodiscs.

Authors:  Thirupathi Ravula; Nathaniel Z Hardin; Jia Bai; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2018-08-23       Impact factor: 6.222

2.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

3.  Measuring Remodeling of the Lipid Environment Surrounding Membrane Proteins with Lipid Exchange and Native Mass Spectrometry.

Authors:  Guozhi Zhang; James E Keener; Michael T Marty
Journal:  Anal Chem       Date:  2020-04-07       Impact factor: 6.986

4.  Bicelles Rich in both Sphingolipids and Cholesterol and Their Use in Studies of Membrane Proteins.

Authors:  James M Hutchison; Kuo-Chih Shih; Holger A Scheidt; Sarah M Fantin; Kristine F Parson; George A Pantelopulos; Haley R Harrington; Kathleen F Mittendorf; Shuo Qian; Richard A Stein; Scott E Collier; Melissa G Chambers; John Katsaras; Markus W Voehler; Brandon T Ruotolo; Daniel Huster; Robert L McFeeters; John E Straub; Mu-Ping Nieh; Charles R Sanders
Journal:  J Am Chem Soc       Date:  2020-07-08       Impact factor: 15.419

5.  Nanodisc-Forming Scaffold Protein Promoted Retardation of Amyloid-Beta Aggregation.

Authors:  Bikash Ranjan Sahoo; Takuya Genjo; Sarah J Cox; Andrea K Stoddard; G M Anantharamaiah; Carol Fierke; Ayyalusamy Ramamoorthy
Journal:  J Mol Biol       Date:  2018-08-28       Impact factor: 5.469

6.  Lipid composition and macromolecular crowding effects on CYP2J2-mediated drug metabolism in nanodiscs.

Authors:  Hannah C Huff; Demetri Maroutsos; Aditi Das
Journal:  Protein Sci       Date:  2019-04-01       Impact factor: 6.725

7.  A Minimal Functional Complex of Cytochrome P450 and FBD of Cytochrome P450 Reductase in Nanodiscs.

Authors:  Elke Prade; Mukesh Mahajan; Sang-Choul Im; Meng Zhang; Katherine A Gentry; G M Anantharamaiah; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-14       Impact factor: 15.336

8.  The apoA-I mimetic peptide 4F protects apolipoprotein A-I from oxidative damage.

Authors:  C Roger White; Geeta Datta; Landon Wilson; Mayakonda N Palgunachari; G M Anantharamaiah
Journal:  Chem Phys Lipids       Date:  2019-01-29       Impact factor: 3.329

Review 9.  Polymer nanodiscs: Advantages and limitations.

Authors:  Thirupathi Ravula; Nathaniel Z Hardin; Ayyalusamy Ramamoorthy
Journal:  Chem Phys Lipids       Date:  2019-01-29       Impact factor: 3.329

10.  Nanodisc reconstitution of flavin mononucleotide binding domain of cytochrome-P450-reductase enables high-resolution NMR probing.

Authors:  Bankala Krishnarjuna; Toshio Yamazaki; G M Anantharamaiah; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2021-04-16       Impact factor: 6.222

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