Literature DB >> 29329720

Discoveries of Extrachromosomal Circles of DNA in Normal and Tumor Cells.

Teressa Paulsen1, Pankaj Kumar1, M Murat Koseoglu1, Anindya Dutta2.   

Abstract

While the vast majority of cellular DNA in eukaryotes is contained in long linear strands in chromosomes, we have long recognized some exceptions like mitochondrial DNA, plasmids in yeasts, and double minutes (DMs) in cancer cells where the DNA is present in extrachromosomal circles. In addition, specialized extrachromosomal circles of DNA (eccDNA) have been noted to arise from repetitive genomic sequences like telomeric DNA or rDNA. Recently eccDNA arising from unique (nonrepetitive) DNA have been discovered in normal and malignant cells, raising interesting questions about their biogenesis, function and clinical utility. Here, we review recent results and future directions of inquiry on these new forms of eccDNA.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2018        PMID: 29329720      PMCID: PMC5881399          DOI: 10.1016/j.tig.2017.12.010

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  57 in total

1.  Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues.

Authors:  Yoshiyuki Shibata; Pankaj Kumar; Ryan Layer; Smaranda Willcox; Jeffrey R Gagan; Jack D Griffith; Anindya Dutta
Journal:  Science       Date:  2012-03-08       Impact factor: 47.728

2.  MOLECULAR SIZE AND CIRCULARITY OF DNA IN CELLS OF MAMMALS AND HIGHER PLANTS.

Authors:  Y HOTTA; A BASSEL
Journal:  Proc Natl Acad Sci U S A       Date:  1965-02       Impact factor: 11.205

3.  Molecular structure of double-minute chromosomes bearing amplified copies of the epidermal growth factor receptor gene in gliomas.

Authors:  Nicolas Vogt; Sandrine-Hélène Lefèvre; Françoise Apiou; Anne-Marie Dutrillaux; Andrej Cör; Pascal Leuraud; Marie-France Poupon; Bernard Dutrillaux; Michelle Debatisse; Bernard Malfoy
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-21       Impact factor: 11.205

4.  Purification of eucaryotic extrachromosomal circular DNAs using exonuclease III.

Authors:  J W Gaubatz; S C Flores
Journal:  Anal Biochem       Date:  1990-02-01       Impact factor: 3.365

5.  L1 sequences in HeLa extrachromosomal circular DNA: evidence for circularization by homologous recombination.

Authors:  R S Jones; S S Potter
Journal:  Proc Natl Acad Sci U S A       Date:  1985-04       Impact factor: 11.205

6.  Characterization of nuclear and satellite DNA from trypanosomes.

Authors:  T Ono; Y Ozeki; S Okubo; S Inoki
Journal:  Biken J       Date:  1971-09

Review 7.  The structure and replication of kinetoplast DNA.

Authors:  T A Shapiro; P T Englund
Journal:  Annu Rev Microbiol       Date:  1995       Impact factor: 15.500

8.  Small circular DNA in Drosophila melanogaster.

Authors:  S Stanfield; D R Helinski
Journal:  Cell       Date:  1976-10       Impact factor: 41.582

9.  Regulated formation of extrachromosomal circular DNA molecules during development in Xenopus laevis.

Authors:  S Cohen; S Menut; M Méchali
Journal:  Mol Cell Biol       Date:  1999-10       Impact factor: 4.272

10.  Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus.

Authors:  David Gresham; Renata Usaite; Susanne Manuela Germann; Michael Lisby; David Botstein; Birgitte Regenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

View more
  53 in total

Review 1.  Cell-Free eccDNAs: A New Type of Nucleic Acid Component for Liquid Biopsy?

Authors:  Jing Zhu; Siyu Chen; Fan Zhang; Liang Wang
Journal:  Mol Diagn Ther       Date:  2018-10       Impact factor: 4.074

Review 2.  Extrachromosomal oncogene amplification in tumour pathogenesis and evolution.

Authors:  Roel G W Verhaak; Vineet Bafna; Paul S Mischel
Journal:  Nat Rev Cancer       Date:  2019-05       Impact factor: 60.716

3.  MicroDNA levels are dependent on MMEJ, repressed by c-NHEJ pathway, and stimulated by DNA damage.

Authors:  Teressa Paulsen; Pumoli Malapati; Yoshiyuki Shibata; Briana Wilson; Rebeka Eki; Mouadh Benamar; Tarek Abbas; Anindya Dutta
Journal:  Nucleic Acids Res       Date:  2021-11-18       Impact factor: 16.971

Review 4.  Preventing excess replication origin activation to ensure genome stability.

Authors:  Bhushan L Thakur; Anagh Ray; Christophe E Redon; Mirit I Aladjem
Journal:  Trends Genet       Date:  2021-10-06       Impact factor: 11.639

Review 5.  Guilt by association: EcDNA as a mobile transactivator in cancer.

Authors:  Yanfen Zhu; Liang Gong; Chia-Lin Wei
Journal:  Trends Cancer       Date:  2022-06-23

Review 6.  Gene regulation on extrachromosomal DNA.

Authors:  King L Hung; Paul S Mischel; Howard Y Chang
Journal:  Nat Struct Mol Biol       Date:  2022-08-10       Impact factor: 18.361

7.  Nuclear Membrane Rupture and Its Consequences.

Authors:  John Maciejowski; Emily M Hatch
Journal:  Annu Rev Cell Dev Biol       Date:  2020-07-21       Impact factor: 13.827

8.  Genomic Copy-Number Loss Is Rescued by Self-Limiting Production of DNA Circles.

Authors:  Andrés Mansisidor; Temistocles Molinar; Priyanka Srivastava; Demetri D Dartis; Adriana Pino Delgado; Hannah G Blitzblau; Hannah Klein; Andreas Hochwagen
Journal:  Mol Cell       Date:  2018-10-04       Impact factor: 17.970

Review 9.  The contributions of extrachromosomal DNA elements in neoplasm progression.

Authors:  Jiawei Hong; Shusen Zheng; Donghai Jiang
Journal:  Am J Cancer Res       Date:  2021-06-15       Impact factor: 6.166

10.  ATAC-Seq-based Identification of Extrachromosomal Circular DNA in Mammalian Cells and Its Validation Using Inverse PCR and FISH.

Authors:  Zhangli Su; Shekhar Saha; Teressa Paulsen; Pankaj Kumar; Anindya Dutta
Journal:  Bio Protoc       Date:  2021-05-05
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.