Literature DB >> 30872802

Extrachromosomal oncogene amplification in tumour pathogenesis and evolution.

Roel G W Verhaak1, Vineet Bafna2, Paul S Mischel3,4.   

Abstract

Recent reports have demonstrated that oncogene amplification on extrachromosomal DNA (ecDNA) is a frequent event in cancer, providing new momentum to explore a phenomenon first discovered several decades ago. The direct consequence of ecDNA gains in these cases is an increase in DNA copy number of the oncogenes residing on the extrachromosomal element. A secondary effect, perhaps even more important, is that the unequal segregation of ecDNA from a parental tumour cell to offspring cells rapidly increases tumour heterogeneity, thus providing the tumour with an additional array of responses to microenvironment-induced and therapy-induced stress factors and perhaps providing an evolutionary advantage. This Perspectives article discusses the current knowledge and potential implications of oncogene amplification on ecDNA in cancer.

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Mesh:

Year:  2019        PMID: 30872802      PMCID: PMC7168519          DOI: 10.1038/s41568-019-0128-6

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  67 in total

1.  Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues.

Authors:  Yoshiyuki Shibata; Pankaj Kumar; Ryan Layer; Smaranda Willcox; Jeffrey R Gagan; Jack D Griffith; Anindya Dutta
Journal:  Science       Date:  2012-03-08       Impact factor: 47.728

2.  Unstable amplification of an altered dihydrofolate reductase gene associated with double-minute chromosomes.

Authors:  D A Haber; R T Schimke
Journal:  Cell       Date:  1981-11       Impact factor: 41.582

3.  Mosaic amplification of multiple receptor tyrosine kinase genes in glioblastoma.

Authors:  Matija Snuderl; Ladan Fazlollahi; Long P Le; Mai Nitta; Boryana H Zhelyazkova; Christian J Davidson; Sara Akhavanfard; Daniel P Cahill; Kenneth D Aldape; Rebecca A Betensky; David N Louis; A John Iafrate
Journal:  Cancer Cell       Date:  2011-12-01       Impact factor: 31.743

4.  Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking.

Authors:  Joachim Weischenfeldt; Taronish Dubash; Alexandros P Drainas; Balca R Mardin; Yuanyuan Chen; Adrian M Stütz; Sebastian M Waszak; Graziella Bosco; Ann Rita Halvorsen; Benjamin Raeder; Theocharis Efthymiopoulos; Serap Erkek; Christine Siegl; Hermann Brenner; Odd Terje Brustugun; Sebastian M Dieter; Paul A Northcott; Iver Petersen; Stefan M Pfister; Martin Schneider; Steinar K Solberg; Erik Thunissen; Wilko Weichert; Thomas Zichner; Roman Thomas; Martin Peifer; Aslaug Helland; Claudia R Ball; Martin Jechlinger; Rocio Sotillo; Hanno Glimm; Jan O Korbel
Journal:  Nat Genet       Date:  2016-11-21       Impact factor: 38.330

5.  Frequency of double minute chromosomes and combined cytogenetic abnormalities and their characteristics.

Authors:  Yihui Fan; Renfang Mao; Hongpei Lv; Jie Xu; Lei Yan; Yanhong Liu; Meng Shi; Guohua Ji; Yang Yu; Jing Bai; Yan Jin; Songbin Fu
Journal:  J Appl Genet       Date:  2010-11-11       Impact factor: 3.240

6.  Gene amplification as double minutes or homogeneously staining regions in solid tumors: origin and structure.

Authors:  Clelia Tiziana Storlazzi; Angelo Lonoce; Maria C Guastadisegni; Domenico Trombetta; Pietro D'Addabbo; Giulia Daniele; Alberto L'Abbate; Gemma Macchia; Cecilia Surace; Klaas Kok; Reinhard Ullmann; Stefania Purgato; Orazio Palumbo; Massimo Carella; Peter F Ambros; Mariano Rocchi
Journal:  Genome Res       Date:  2010-07-14       Impact factor: 9.043

7.  Relationship between gene amplification and chromosomal deviations in malignant human gliomas.

Authors:  S H Bigner; A J Wong; J Mark; L H Muhlbaier; K W Kinzler; B Vogelstein; D D Bigner
Journal:  Cancer Genet Cytogenet       Date:  1987-11

8.  Transposition and amplification of oncogene-related sequences in human neuroblastomas.

Authors:  N E Kohl; N Kanda; R R Schreck; G Bruns; S A Latt; F Gilbert; F W Alt
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

9.  Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens.

Authors:  Massa J Shoura; Idan Gabdank; Loren Hansen; Jason Merker; Jason Gotlib; Stephen D Levene; Andrew Z Fire
Journal:  G3 (Bethesda)       Date:  2017-10-05       Impact factor: 3.154

10.  Allele-Specific HLA Loss and Immune Escape in Lung Cancer Evolution.

Authors:  Nicholas McGranahan; Rachel Rosenthal; Crispin T Hiley; Andrew J Rowan; Thomas B K Watkins; Gareth A Wilson; Nicolai J Birkbak; Selvaraju Veeriah; Peter Van Loo; Javier Herrero; Charles Swanton
Journal:  Cell       Date:  2017-10-26       Impact factor: 41.582

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  76 in total

Review 1.  New insights of extrachromosomal DNA in tumorigenesis and therapeutic resistance of cancer.

Authors:  Hui Qiu; Zhi-Ying Shao; Xin Wen; Long-Zhen Zhang
Journal:  Am J Cancer Res       Date:  2020-12-01       Impact factor: 6.166

2.  Computing the Statistical Significance of Overlap between Genome Annotations with iStat.

Authors:  Shahab Sarmashghi; Vineet Bafna
Journal:  Cell Syst       Date:  2019-06-12       Impact factor: 10.304

Review 3.  Cellular and genomic approaches for exploring structural chromosomal rearrangements.

Authors:  Qing Hu; Elizabeth G Maurais; Peter Ly
Journal:  Chromosome Res       Date:  2020-01-13       Impact factor: 5.239

4.  Chromothripsis followed by circular recombination drives oncogene amplification in human cancer.

Authors:  Carolina Rosswog; Christoph Bartenhagen; Anne Welte; Yvonne Kahlert; Nadine Hemstedt; Witali Lorenz; Maria Cartolano; Sandra Ackermann; Sven Perner; Wenzel Vogel; Janine Altmüller; Peter Nürnberg; Falk Hertwig; Gudrun Göhring; Esther Lilienweiss; Adrian M Stütz; Jan O Korbel; Roman K Thomas; Martin Peifer; Matthias Fischer
Journal:  Nat Genet       Date:  2021-11-15       Impact factor: 38.330

Review 5.  MYC: a multipurpose oncogene with prognostic and therapeutic implications in blood malignancies.

Authors:  Seyed Esmaeil Ahmadi; Samira Rahimi; Bahman Zarandi; Rouzbeh Chegeni; Majid Safa
Journal:  J Hematol Oncol       Date:  2021-08-09       Impact factor: 17.388

Review 6.  The contributions of extrachromosomal DNA elements in neoplasm progression.

Authors:  Jiawei Hong; Shusen Zheng; Donghai Jiang
Journal:  Am J Cancer Res       Date:  2021-06-15       Impact factor: 6.166

7.  Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription.

Authors:  Yanfen Zhu; Amit D Gujar; Chee-Hong Wong; Harianto Tjong; Chew Yee Ngan; Liang Gong; Yi-An Chen; Hoon Kim; Jihe Liu; Meihong Li; Adam Mil-Homens; Rahul Maurya; Chris Kuhlberg; Fanyue Sun; Eunhee Yi; Ana C deCarvalho; Yijun Ruan; Roel G W Verhaak; Chia-Lin Wei
Journal:  Cancer Cell       Date:  2021-04-08       Impact factor: 31.743

Review 8.  Drivers of dynamic intratumor heterogeneity and phenotypic plasticity.

Authors:  Antara Biswas; Subhajyoti De
Journal:  Am J Physiol Cell Physiol       Date:  2021-03-03       Impact factor: 4.249

9.  Use of signals of positive and negative selection to distinguish cancer genes and passenger genes.

Authors:  László Bányai; Maria Trexler; Krisztina Kerekes; Orsolya Csuka; László Patthy
Journal:  Elife       Date:  2021-01-11       Impact factor: 8.140

Review 10.  Extrachromosomal circular DNA: a new potential role in cancer progression.

Authors:  Tianyi Wang; Haijian Zhang; Youlang Zhou; Jiahai Shi
Journal:  J Transl Med       Date:  2021-06-10       Impact factor: 5.531

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