Literature DB >> 35753910

Guilt by association: EcDNA as a mobile transactivator in cancer.

Yanfen Zhu1, Liang Gong2, Chia-Lin Wei3.   

Abstract

Extrachromosomal DNA (ecDNA), first described in the 1960s, is emerging as a prevalent but poorly characterized oncogenic alteration in cancer. ecDNA is a reservoir for oncogene amplification and is associated with an aggressive tumor phenotype and poor patient outcome. Despite the long-held knowledge of its existence, little is known about how ecDNA affects tumor cell behavior. Recent data reveal that ecDNA hubs are mobile transcriptional enhancers which can transactivate gene expression through chromatin interactions. Given its prevalence, structural complexity, and unequal segregation into daughter cells, ecDNA can offer selective growth advantages, contribute to intratumor heterogeneity (ITH), and accelerate tumor evolution. Future technology development is expected to transform the current paradigm for studying ecDNA and lead to therapeutic strategies targeting ecDNA vulnerabilities.
Copyright © 2022 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  cancer genome variation; chromatin interactions; ecDNA hubs; extrachromosomal circular DNA; mobile activators; superenhancers

Mesh:

Substances:

Year:  2022        PMID: 35753910      PMCID: PMC9388558          DOI: 10.1016/j.trecan.2022.04.011

Source DB:  PubMed          Journal:  Trends Cancer        ISSN: 2405-8025


  77 in total

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Authors:  Wouter de Laat; Denis Duboule
Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

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Authors:  Maxwell R Mumbach; Adam J Rubin; Ryan A Flynn; Chao Dai; Paul A Khavari; William J Greenleaf; Howard Y Chang
Journal:  Nat Methods       Date:  2016-09-19       Impact factor: 28.547

Review 3.  Extrachromosomal oncogene amplification in tumour pathogenesis and evolution.

Authors:  Roel G W Verhaak; Vineet Bafna; Paul S Mischel
Journal:  Nat Rev Cancer       Date:  2019-05       Impact factor: 60.716

4.  Master transcription factors and mediator establish super-enhancers at key cell identity genes.

Authors:  Warren A Whyte; David A Orlando; Denes Hnisz; Brian J Abraham; Charles Y Lin; Michael H Kagey; Peter B Rahl; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

Review 5.  Transcriptional Regulation by (Super)Enhancers: From Discovery to Mechanisms.

Authors:  Frank Grosveld; Jente van Staalduinen; Ralph Stadhouders
Journal:  Annu Rev Genomics Hum Genet       Date:  2021-05-05       Impact factor: 8.929

6.  eccDNAs are apoptotic products with high innate immunostimulatory activity.

Authors:  Yuangao Wang; Meng Wang; Mohamed Nadhir Djekidel; Huan Chen; Di Liu; Frederick W Alt; Yi Zhang
Journal:  Nature       Date:  2021-10-20       Impact factor: 69.504

7.  An approach to suppress the evolution of resistance in BRAFV600E-mutant cancer.

Authors:  Yaohua Xue; Luciano Martelotto; Timour Baslan; Alberto Vides; Martha Solomon; Trang Thi Mai; Neelam Chaudhary; Greg J Riely; Bob T Li; Kerry Scott; Fabiola Cechhi; Ulrika Stierner; Kalyani Chadalavada; Elisa de Stanchina; Sarit Schwartz; Todd Hembrough; Gouri Nanjangud; Michael F Berger; Jonas Nilsson; Scott W Lowe; Jorge S Reis-Filho; Neal Rosen; Piro Lito
Journal:  Nat Med       Date:  2017-07-17       Impact factor: 53.440

8.  LHX2- and LDB1-mediated trans interactions regulate olfactory receptor choice.

Authors:  Kevin Monahan; Adan Horta; Stavros Lomvardas
Journal:  Nature       Date:  2019-01-09       Impact factor: 49.962

9.  Structure and evolution of double minutes in diagnosis and relapse brain tumors.

Authors:  Ke Xu; Liang Ding; Ti-Cheng Chang; Ying Shao; Jason Chiang; Heather Mulder; Shuoguo Wang; Tim I Shaw; Ji Wen; Laura Hover; Clay McLeod; Yong-Dong Wang; John Easton; Michael Rusch; James Dalton; James R Downing; David W Ellison; Jinghui Zhang; Suzanne J Baker; Gang Wu
Journal:  Acta Neuropathol       Date:  2018-09-28       Impact factor: 17.088

10.  Identification and characterization of extrachromosomal circular DNA in maternal plasma.

Authors:  Sarah T K Sin; Peiyong Jiang; Jiaen Deng; Lu Ji; Suk Hang Cheng; Anindya Dutta; Tak Y Leung; K C Allen Chan; Rossa W K Chiu; Y M Dennis Lo
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-03       Impact factor: 11.205

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  1 in total

Review 1.  Extrachromosomal circular DNA: biogenesis, structure, functions and diseases.

Authors:  Ludi Yang; Ruobing Jia; Tongxin Ge; Shengfang Ge; Ai Zhuang; Peiwei Chai; Xianqun Fan
Journal:  Signal Transduct Target Ther       Date:  2022-10-02
  1 in total

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