Literature DB >> 29272947

Multivariable extrapolation of grand canonical free energy landscapes.

Nathan A Mahynski1, Jeffrey R Errington2, Vincent K Shen1.   

Abstract

We derive an approach for extrapolating the free energy landscape of multicomponent systems in the grand canonical ensemble, obtained from flat-histogram Monte Carlo simulations, from one set of temperature and chemical potentials to another. This is accomplished by expanding the landscape in a Taylor series at each value of the order parameter which defines its macrostate phase space. The coefficients in each Taylor polynomial are known exactly from fluctuation formulas, which may be computed by measuring the appropriate moments of extensive variables that fluctuate in this ensemble. Here we derive the expressions necessary to define these coefficients up to arbitrary order. In principle, this enables a single flat-histogram simulation to provide complete thermodynamic information over a broad range of temperatures and chemical potentials. Using this, we also show how to combine a small number of simulations, each performed at different conditions, in a thermodynamically consistent fashion to accurately compute properties at arbitrary temperatures and chemical potentials. This method may significantly increase the computational efficiency of biased grand canonical Monte Carlo simulations, especially for multicomponent mixtures. Although approximate, this approach is amenable to high-throughput and data-intensive investigations where it is preferable to have a large quantity of reasonably accurate simulation data, rather than a smaller amount with a higher accuracy.

Entities:  

Year:  2017        PMID: 29272947      PMCID: PMC5836324          DOI: 10.1063/1.5006906

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  16 in total

1.  Simulation of phase transitions in fluids.

Authors:  J J de Pablo; Q Yan; F A Escobedo
Journal:  Annu Rev Phys Chem       Date:  1999       Impact factor: 12.703

2.  Theory of binless multi-state free energy estimation with applications to protein-ligand binding.

Authors:  Zhiqiang Tan; Emilio Gallicchio; Mauro Lapelosa; Ronald M Levy
Journal:  J Chem Phys       Date:  2012-04-14       Impact factor: 3.488

3.  New Monte Carlo technique for studying phase transitions.

Authors: 
Journal:  Phys Rev Lett       Date:  1988-12-05       Impact factor: 9.161

4.  Monte Carlo Simulation Methods for Computing Liquid-Vapor Saturation Properties of Model Systems.

Authors:  Kaustubh S Rane; Sabharish Murali; Jeffrey R Errington
Journal:  J Chem Theory Comput       Date:  2013-05-30       Impact factor: 6.006

5.  Phase-space overlap measures. I. Fail-safe bias detection in free energies calculated by molecular simulation.

Authors:  Di Wu; David A Kofke
Journal:  J Chem Phys       Date:  2005-08-01       Impact factor: 3.488

6.  Statistically optimal analysis of samples from multiple equilibrium states.

Authors:  Michael R Shirts; John D Chodera
Journal:  J Chem Phys       Date:  2008-09-28       Impact factor: 3.488

7.  Elucidating the effects of adsorbent flexibility on fluid adsorption using simple models and flat-histogram sampling methods.

Authors:  Vincent K Shen; Daniel W Siderius
Journal:  J Chem Phys       Date:  2014-06-28       Impact factor: 3.488

8.  Evaluation of the grand-canonical partition function using expanded Wang-Landau simulations. III. Impact of combining rules on mixtures properties.

Authors:  Caroline Desgranges; Jerome Delhommelle
Journal:  J Chem Phys       Date:  2014-03-14       Impact factor: 3.488

9.  Mapping coexistence lines via free-energy extrapolation: application to order-disorder phase transitions of hard-core mixtures.

Authors:  Fernando A Escobedo
Journal:  J Chem Phys       Date:  2014-03-07       Impact factor: 3.488

10.  Multicomponent adsorption in mesoporous flexible materials with flat-histogram Monte Carlo methods.

Authors:  Nathan A Mahynski; Vincent K Shen
Journal:  J Chem Phys       Date:  2016-11-07       Impact factor: 3.488

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  4 in total

1.  Communication: Predicting virial coefficients and alchemical transformations by extrapolating Mayer-sampling Monte Carlo simulations.

Authors:  Harold W Hatch; Sally Jiao; Nathan A Mahynski; Marco A Blanco; Vincent K Shen
Journal:  J Chem Phys       Date:  2017-12-21       Impact factor: 3.488

2.  Extrapolation and interpolation strategies for efficiently estimating structural observables as a function of temperature and density.

Authors:  Jacob I Monroe; Harold W Hatch; Nathan A Mahynski; M Scott Shell; Vincent K Shen
Journal:  J Chem Phys       Date:  2020-10-14       Impact factor: 3.488

3.  Flat-Histogram Monte Carlo as an Efficient Tool To Evaluate Adsorption Processes Involving Rigid and Deformable Molecules.

Authors:  Matthew Witman; Nathan A Mahynski; Berend Smit
Journal:  J Chem Theory Comput       Date:  2018-11-27       Impact factor: 6.006

4.  Predicting structural properties of fluids by thermodynamic extrapolation.

Authors:  Nathan A Mahynski; Sally Jiao; Harold W Hatch; Marco A Blanco; Vincent K Shen
Journal:  J Chem Phys       Date:  2018-05-21       Impact factor: 3.488

  4 in total

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