Literature DB >> 29272929

Communication: Predicting virial coefficients and alchemical transformations by extrapolating Mayer-sampling Monte Carlo simulations.

Harold W Hatch1, Sally Jiao2, Nathan A Mahynski1, Marco A Blanco1, Vincent K Shen1.   

Abstract

Virial coefficients are predicted over a large range of both temperatures and model parameter values (i.e., alchemical transformation) from an individual Mayer-sampling Monte Carlo simulation by statistical mechanical extrapolation with minimal increase in computational cost. With this extrapolation method, a Mayer-sampling Monte Carlo simulation of the SPC/E (extended simple point charge) water model quantitatively predicted the second virial coefficient as a continuous function spanning over four orders of magnitude in value and over three orders of magnitude in temperature with less than a 2% deviation. In addition, the same simulation predicted the second virial coefficient if the site charges were scaled by a constant factor, from an increase of 40% down to zero charge. This method is also shown to perform well for the third virial coefficient and the exponential parameter for a Lennard-Jones fluid.

Entities:  

Year:  2017        PMID: 29272929      PMCID: PMC5826560          DOI: 10.1063/1.5016165

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Mayer sampling: calculation of cluster integrals using free-energy perturbation methods.

Authors:  Jayant K Singh; David A Kofke
Journal:  Phys Rev Lett       Date:  2004-06-02       Impact factor: 9.161

2.  Eighth to sixteenth virial coefficients of the Lennard-Jones model.

Authors:  Chao Feng; Andrew J Schultz; Vipin Chaudhary; David A Kofke
Journal:  J Chem Phys       Date:  2015-07-28       Impact factor: 3.488

3.  Higher-order virial coefficients of water models.

Authors:  Kenneth M Benjamin; Jayant K Singh; Andrew J Schultz; David A Kofke
Journal:  J Phys Chem B       Date:  2007-09-13       Impact factor: 2.991

4.  Predicting low-temperature free energy landscapes with flat-histogram Monte Carlo methods.

Authors:  Nathan A Mahynski; Marco A Blanco; Jeffrey R Errington; Vincent K Shen
Journal:  J Chem Phys       Date:  2017-02-21       Impact factor: 3.488

5.  Multivariable extrapolation of grand canonical free energy landscapes.

Authors:  Nathan A Mahynski; Jeffrey R Errington; Vincent K Shen
Journal:  J Chem Phys       Date:  2017-12-21       Impact factor: 3.488

6.  Modulating non-native aggregation and electrostatic protein-protein interactions with computationally designed single-point mutations.

Authors:  C J O'Brien; M A Blanco; J A Costanzo; M Enterline; E J Fernandez; A S Robinson; C J Roberts
Journal:  Protein Eng Des Sel       Date:  2016-05-09       Impact factor: 1.650

7.  Self-assembly of trimer colloids: effect of shape and interaction range.

Authors:  Harold W Hatch; Seung-Yeob Yang; Jeetain Mittal; Vincent K Shen
Journal:  Soft Matter       Date:  2016-04-18       Impact factor: 3.679

8.  Temperature extrapolation of multicomponent grand canonical free energy landscapes.

Authors:  Nathan A Mahynski; Jeffrey R Errington; Vincent K Shen
Journal:  J Chem Phys       Date:  2017-08-07       Impact factor: 3.488

9.  Coarse-grained model for colloidal protein interactions, B(22), and protein cluster formation.

Authors:  Marco A Blanco; Erinc Sahin; Anne S Robinson; Christopher J Roberts
Journal:  J Phys Chem B       Date:  2013-12-10       Impact factor: 2.991

  9 in total
  4 in total

1.  Extrapolation and interpolation strategies for efficiently estimating structural observables as a function of temperature and density.

Authors:  Jacob I Monroe; Harold W Hatch; Nathan A Mahynski; M Scott Shell; Vincent K Shen
Journal:  J Chem Phys       Date:  2020-10-14       Impact factor: 3.488

2.  Predicting structural properties of fluids by thermodynamic extrapolation.

Authors:  Nathan A Mahynski; Sally Jiao; Harold W Hatch; Marco A Blanco; Vincent K Shen
Journal:  J Chem Phys       Date:  2018-05-21       Impact factor: 3.488

3.  Parallel Prefetching for Canonical Ensemble Monte Carlo Simulations.

Authors:  Harold W Hatch
Journal:  J Phys Chem A       Date:  2020-08-25       Impact factor: 2.781

Review 4.  Computational models for studying physical instabilities in high concentration biotherapeutic formulations.

Authors:  Marco A Blanco
Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 5.857

  4 in total

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