Literature DB >> 29269963

Selection and Validation of Predictive Models of Radiation Effects on Tumor Growth Based on Noninvasive Imaging Data.

E A B F Lima1, J T Oden1, B Wohlmuth2, A Shahmoradi1, D A Hormuth1, T E Yankeelov1,3,4, L Scarabosio2, T Horger2.   

Abstract

The use of mathematical and computational models for reliable predictions of tumor growth and decline in living organisms is one of the foremost challenges in modern predictive science, as it must cope with uncertainties in observational data, model selection, model parameters, and model inadequacy, all for very complex physical and biological systems. In this paper, large classes of parametric models of tumor growth in vascular tissue are discussed including models for radiation therapy. Observational data is obtained from MRI of a murine model of glioma and observed over a period of about three weeks, with X-ray radiation administered 14.5 days into the experimental program. Parametric models of tumor proliferation and decline are presented based on the balance laws of continuum mixture theory, particularly mass balance, and from accepted biological hypotheses on tumor growth. Among these are new model classes that include characterizations of effects of radiation and simple models of mechanical deformation of tumors. The Occam Plausibility Algorithm (OPAL) is implemented to provide a Bayesian statistical calibration of the model classes, 39 models in all, as well as the determination of the most plausible models in these classes relative to the observational data, and to assess model inadequacy through statistical validation processes. Discussions of the numerical analysis of finite element approximations of the system of stochastic, nonlinear partial differential equations characterizing the model classes, as well as the sampling algorithms for Monte Carlo and Markov chain Monte Carlo (MCMC) methods employed in solving the forward stochastic problem, and in computing posterior distributions of parameters and model plausibilities are provided. The results of the analyses described suggest that the general framework developed can provide a useful approach for predicting tumor growth and the effects of radiation.

Entities:  

Keywords:  Bayesian inference; MRI imaging; Monte Carlo methods; calibration; model plausibilities; phenomenological models; radiotherapy; statistical sampling; validation

Year:  2017        PMID: 29269963      PMCID: PMC5734134          DOI: 10.1016/j.cma.2017.08.009

Source DB:  PubMed          Journal:  Comput Methods Appl Mech Eng        ISSN: 0045-7825            Impact factor:   6.756


  22 in total

Review 1.  The hallmarks of cancer.

Authors:  D Hanahan; R A Weinberg
Journal:  Cell       Date:  2000-01-07       Impact factor: 41.582

2.  Replica Monte Carlo simulation of spin glasses.

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3.  Integration of diffusion-weighted MRI data and a simple mathematical model to predict breast tumor cellularity during neoadjuvant chemotherapy.

Authors:  Nkiruka C Atuegwu; Lori R Arlinghaus; Xia Li; E Brian Welch; Bapsi A Chakravarthy; John C Gore; Thomas E Yankeelov
Journal:  Magn Reson Med       Date:  2011-09-28       Impact factor: 4.668

4.  Clinically relevant modeling of tumor growth and treatment response.

Authors:  Thomas E Yankeelov; Nkiruka Atuegwu; David Hormuth; Jared A Weis; Stephanie L Barnes; Michael I Miga; Erin C Rericha; Vito Quaranta
Journal:  Sci Transl Med       Date:  2013-05-29       Impact factor: 17.956

5.  Three-dimensional Image-based Mechanical Modeling for Predicting the Response of Breast Cancer to Neoadjuvant Therapy.

Authors:  Jared A Weis; Michael I Miga; Thomas E Yankeelov
Journal:  Comput Methods Appl Mech Eng       Date:  2016-09-01       Impact factor: 6.756

6.  Predicting in vivo glioma growth with the reaction diffusion equation constrained by quantitative magnetic resonance imaging data.

Authors:  David A Hormuth; Jared A Weis; Stephanie L Barnes; Michael I Miga; Erin C Rericha; Vito Quaranta; Thomas E Yankeelov
Journal:  Phys Biol       Date:  2015-06-04       Impact factor: 2.583

7.  Multimodality image registration by maximization of mutual information.

Authors:  F Maes; A Collignon; D Vandermeulen; G Marchal; P Suetens
Journal:  IEEE Trans Med Imaging       Date:  1997-04       Impact factor: 10.048

8.  Modelling the radiotherapy effect in the reaction-diffusion equation.

Authors:  Giovanni Borasi; Alan Nahum
Journal:  Phys Med       Date:  2016-08-31       Impact factor: 2.685

9.  A mathematical model for brain tumor response to radiation therapy.

Authors:  R Rockne; E C Alvord; J K Rockhill; K R Swanson
Journal:  J Math Biol       Date:  2008-09-25       Impact factor: 2.259

Review 10.  Hallmarks of cancer: the next generation.

Authors:  Douglas Hanahan; Robert A Weinberg
Journal:  Cell       Date:  2011-03-04       Impact factor: 41.582

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  12 in total

Review 1.  Mechanism-Based Modeling of Tumor Growth and Treatment Response Constrained by Multiparametric Imaging Data.

Authors:  David A Hormuth; Angela M Jarrett; Ernesto A B F Lima; Matthew T McKenna; David T Fuentes; Thomas E Yankeelov
Journal:  JCO Clin Cancer Inform       Date:  2019-02

2.  Integrated Biophysical Modeling and Image Analysis: Application to Neuro-Oncology.

Authors:  Andreas Mang; Spyridon Bakas; Shashank Subramanian; Christos Davatzikos; George Biros
Journal:  Annu Rev Biomed Eng       Date:  2020-06-04       Impact factor: 9.590

3.  Coupling brain-tumor biophysical models and diffeomorphic image registration.

Authors:  Klaudius Scheufele; Andreas Mang; Amir Gholami; Christos Davatzikos; George Biros; Miriam Mehl
Journal:  Comput Methods Appl Mech Eng       Date:  2019-01-07       Impact factor: 6.756

4.  Mechanistic modelling of prostate-specific antigen dynamics shows potential for personalized prediction of radiation therapy outcome.

Authors:  Guillermo Lorenzo; Víctor M Pérez-García; Alfonso Mariño; Luis A Pérez-Romasanta; Alessandro Reali; Hector Gomez
Journal:  J R Soc Interface       Date:  2019-08-14       Impact factor: 4.118

5.  Computer simulations suggest that prostate enlargement due to benign prostatic hyperplasia mechanically impedes prostate cancer growth.

Authors:  Guillermo Lorenzo; Thomas J R Hughes; Pablo Dominguez-Frojan; Alessandro Reali; Hector Gomez
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-07       Impact factor: 11.205

Review 6.  Integrating mechanism-based modeling with biomedical imaging to build practical digital twins for clinical oncology.

Authors:  Chengyue Wu; Guillermo Lorenzo; David A Hormuth; Ernesto A B F Lima; Kalina P Slavkova; Julie C DiCarlo; John Virostko; Caleb M Phillips; Debra Patt; Caroline Chung; Thomas E Yankeelov
Journal:  Biophys Rev (Melville)       Date:  2022-05-17

Review 7.  Mathematical models of tumor cell proliferation: A review of the literature.

Authors:  Angela M Jarrett; Ernesto A B F Lima; David A Hormuth; Matthew T McKenna; Xinzeng Feng; David A Ekrut; Anna Claudia M Resende; Amy Brock; Thomas E Yankeelov
Journal:  Expert Rev Anticancer Ther       Date:  2018-10-22       Impact factor: 4.512

8.  Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data.

Authors:  E A B F Lima; N Ghousifam; A Ozkan; J T Oden; A Shahmoradi; M N Rylander; B Wohlmuth; T E Yankeelov
Journal:  Sci Rep       Date:  2018-09-28       Impact factor: 4.379

9.  A computational model of glioma reveals opposing, stiffness-sensitive effects of leaky vasculature and tumor growth on tissue mechanical stress and porosity.

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Review 10.  Optimal Control Theory for Personalized Therapeutic Regimens in Oncology: Background, History, Challenges, and Opportunities.

Authors:  Angela M Jarrett; Danial Faghihi; David A Hormuth Ii; Ernesto A B F Lima; John Virostko; George Biros; Debra Patt; Thomas E Yankeelov
Journal:  J Clin Med       Date:  2020-05-02       Impact factor: 4.241

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