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Literature DB >> 10033814

Replica Monte Carlo simulation of spin glasses.

Abstract

Entities: Gene

Year: 1986 PMID： 10033814 DOI： 10.1103/PhysRevLett.57.2607

Source DB: PubMed Journal: Phys Rev Lett ISSN： 0031-9007 Impact factor: 9.161

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218 in total

1. TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints.

Authors: D Kihara; H Lu; A Kolinski; J Skolnick
Journal: Proc Natl Acad Sci U S A Date: 2001-08-14 Impact factor: 11.205

2. Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genome.

Authors: Daisuke Kihara; Yang Zhang; Hui Lu; Andrzej Kolinski; Jeffrey Skolnick
Journal: Proc Natl Acad Sci U S A Date: 2002-04-16 Impact factor: 11.205

3. A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native state.

Authors: Piotr Pokarowski; Andrzej Kolinski; Jeffrey Skolnick
Journal: Biophys J Date: 2003-03 Impact factor: 4.033

4. Numerical study of the entropy loss of dimerization and the folding thermodynamics of the GCN4 leucine zipper.

Authors: Jorge Viñals; Andrzej Kolinski; Jeffrey Skolnick
Journal: Biophys J Date: 2002-11 Impact factor: 4.033

5. Quantifying uncertainty and sampling quality in biomolecular simulations.

Authors: Alan Grossfield; Daniel M Zuckerman
Journal: Annu Rep Comput Chem Date: 2009-01-01

6. Exploring Flory's isolated-pair hypothesis: statistical mechanics of helix-coil transitions in polyalanine and the C-peptide from RNase A.

Authors: Y Zenmei Ohkubo; Charles L Brooks
Journal: Proc Natl Acad Sci U S A Date: 2003-11-13 Impact factor: 11.205

Replica Monte Carlo simulation of spin glasses.

1. TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints.

2. Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genome.

3. A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native state.

4. Numerical study of the entropy loss of dimerization and the folding thermodynamics of the GCN4 leucine zipper.

5. Quantifying uncertainty and sampling quality in biomolecular simulations.

6. Exploring Flory's isolated-pair hypothesis: statistical mechanics of helix-coil transitions in polyalanine and the C-peptide from RNase A.

7. Statistical analysis of ion mobility spectrometry. I. Unbiased and guided replica-exchange molecular dynamics.

8. Exploring the energy landscapes of protein folding simulations with Bayesian computation.

9. Replica exchange Monte-Carlo simulations of helix bundle membrane proteins: rotational parameters of helices.

Review 10. Machine learning-enabled discovery and design of membrane-active peptides.