Literature DB >> 23937097

Protein-like tertiary folding behavior from heterogeneous backbones.

Zachary E Reinert1, George A Lengyel, W Seth Horne.   

Abstract

Because proteins play vital roles in life, much effort has been invested in their mimicry by synthetic agents. One approach is to design unnatural backbone oligomers ("foldamers") that fold like natural peptides. Despite success in secondary structure mimicry by such species, protein-like tertiary folds remain elusive. A fundamental challenge underlying this task is the design of a sequence of side chains that will specify a complex tertiary folding pattern on an unnatural backbone. We report here a sequence-based approach to convert a natural protein with a compact tertiary fold to an analogue with a backbone composed of ~20% unnatural building blocks but folding behavior similar to that of the parent protein.

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Year:  2013        PMID: 23937097      PMCID: PMC3800155          DOI: 10.1021/ja405422v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  33 in total

1.  Synthesis of a biologically active triazole-containing analogue of cystatin A through successive peptidomimetic alkyne-azide ligations.

Authors:  Ibai E Valverde; Fabien Lecaille; Gilles Lalmanach; Vincent Aucagne; Agnès F Delmas
Journal:  Angew Chem Int Ed Engl       Date:  2011-12-05       Impact factor: 15.336

2.  Extending foldamer design beyond α-helix mimicry: α/β-peptide inhibitors of vascular endothelial growth factor signaling.

Authors:  Holly S Haase; Kimberly J Peterson-Kaufman; Sheeny K Lan Levengood; James W Checco; William L Murphy; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2012-05-01       Impact factor: 15.419

3.  Peptide and peptoid foldamers in medicinal chemistry.

Authors:  W Seth Horne
Journal:  Expert Opin Drug Discov       Date:  2011-11-02       Impact factor: 6.098

4.  Synthesis, folding, and structure of the beta-turn mimic modified B1 domain of streptococcal protein G.

Authors:  B Odaert; F Jean; C Boutillon; E Buisine; O Melnyk; A Tartar; G Lippens
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

5.  Heterocyclic peptide backbone modifications in an alpha-helical coiled coil.

Authors:  W Seth Horne; Maneesh K Yadav; C David Stout; M Reza Ghadiri
Journal:  J Am Chem Soc       Date:  2004-12-01       Impact factor: 15.419

6.  Helix bundle quaternary structure from alpha/beta-peptide foldamers.

Authors:  W Seth Horne; Joshua L Price; James L Keck; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2007-03-16       Impact factor: 15.419

7.  Interplay among side chain sequence, backbone composition, and residue rigidification in polypeptide folding and assembly.

Authors:  W Seth Horne; Joshua L Price; Samuel H Gellman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-27       Impact factor: 11.205

8.  Structural and biological mimicry of protein surface recognition by alpha/beta-peptide foldamers.

Authors:  W Seth Horne; Lisa M Johnson; Thomas J Ketas; Per Johan Klasse; Min Lu; John P Moore; Samuel H Gellman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-17       Impact factor: 11.205

9.  Hairpin folding behavior of mixed α/β-peptides in aqueous solution.

Authors:  George A Lengyel; Rebecca C Frank; W Seth Horne
Journal:  J Am Chem Soc       Date:  2011-03-03       Impact factor: 15.419

10.  Crystal polymorphism of protein GB1 examined by solid-state NMR spectroscopy and X-ray diffraction.

Authors:  Heather L Frericks Schmidt; Lindsay J Sperling; Yi Gui Gao; Benjamin J Wylie; John M Boettcher; Scott R Wilson; Chad M Rienstra
Journal:  J Phys Chem B       Date:  2007-12-04       Impact factor: 2.991

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  36 in total

1.  Heterochiral Knottin Protein: Folding and Solution Structure.

Authors:  Surin K Mong; Frank V Cochran; Hongtao Yu; Zachary Graziano; Yu-Shan Lin; Jennifer R Cochran; Bradley L Pentelute
Journal:  Biochemistry       Date:  2017-10-17       Impact factor: 3.162

2.  Xenoprotein engineering via synthetic libraries.

Authors:  Zachary P Gates; Alexander A Vinogradov; Anthony J Quartararo; Anupam Bandyopadhyay; Zi-Ning Choo; Ethan D Evans; Kathryn H Halloran; Alexander J Mijalis; Surin K Mong; Mark D Simon; Eric A Standley; Evan D Styduhar; Sarah Z Tasker; Faycal Touti; Jessica M Weber; Jessica L Wilson; Timothy F Jamison; Bradley L Pentelute
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-21       Impact factor: 11.205

3.  Heterogeneous-Backbone Foldamer Mimics of Zinc Finger Tertiary Structure.

Authors:  Kelly L George; W Seth Horne
Journal:  J Am Chem Soc       Date:  2017-06-05       Impact factor: 15.419

4.  Backbone Engineering within a Latent β-Hairpin Structure to Design Inhibitors of Polyglutamine Amyloid Formation.

Authors:  Karunakar Kar; Matthew A Baker; George A Lengyel; Cody L Hoop; Ravindra Kodali; In-Ja Byeon; W Seth Horne; Patrick C A van der Wel; Ronald Wetzel
Journal:  J Mol Biol       Date:  2016-12-13       Impact factor: 5.469

5.  Evaluation of β-Amino Acid Replacements in Protein Loops: Effects on Conformational Stability and Structure.

Authors:  David E Mortenson; Dale F Kreitler; Nicole C Thomas; Ilia A Guzei; Samuel H Gellman; Katrina T Forest
Journal:  Chembiochem       Date:  2018-02-13       Impact factor: 3.164

Review 6.  Proteomimetics as protein-inspired scaffolds with defined tertiary folding patterns.

Authors:  W Seth Horne; Tom N Grossmann
Journal:  Nat Chem       Date:  2020-02-06       Impact factor: 24.427

7.  Iterative Nonproteinogenic Residue Incorporation Yields α/β-Peptides with a Helix-Loop-Helix Tertiary Structure and High Affinity for VEGF.

Authors:  James W Checco; Samuel H Gellman
Journal:  Chembiochem       Date:  2017-01-09       Impact factor: 3.164

8.  Designing cooperatively folded abiotic uni- and multimolecular helix bundles.

Authors:  Soumen De; Bo Chi; Thierry Granier; Ting Qi; Victor Maurizot; Ivan Huc
Journal:  Nat Chem       Date:  2017-09-18       Impact factor: 24.427

Review 9.  Engineered protein scaffolds as leads for synthetic inhibitors of protein-protein interactions.

Authors:  Michael G Wuo; Paramjit S Arora
Journal:  Curr Opin Chem Biol       Date:  2018-05-24       Impact factor: 8.822

10.  Exploring the Functional Consequences of Protein Backbone Alteration in Ubiquitin through Native Chemical Ligation.

Authors:  Halina M Werner; Samuel K Estabrooks; G Michael Preston; Jeffrey L Brodsky; W Seth Horne
Journal:  Chembiochem       Date:  2019-08-23       Impact factor: 3.164

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