Literature DB >> 29251498

Protein Inhibitors of CRISPR-Cas9.

Joseph Bondy-Denomy1.   

Abstract

Bacteria are under constant predation from viruses, called bacteriophages (phages). This threat has driven the evolution of multiple defense systems, including the CRISPR-Cas (clustered regularly interspaced short palindromic repeats and CRISPR associated genes) immune pathway. Phages are not passive bystanders in their CRISPR-mediated demise, however, as many have developed potent protein inhibitors of the bacterial adaptive immune system. Here, I review the work that led to the discovery of many distinct "anti-CRISPR" proteins. Furthermore, I outline how understanding their mechanisms of action has provided a suite of specific and high-affinity reagents to modulate and study CRISPR-Cas applications.

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Year:  2018        PMID: 29251498      PMCID: PMC6049822          DOI: 10.1021/acschembio.7b00831

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  56 in total

1.  The Interfaces of Genetic Conflict Are Hot Spots for Innovation.

Authors:  Joshua Carter; Connor Hoffman; Blake Wiedenheft
Journal:  Cell       Date:  2017-01-12       Impact factor: 41.582

2.  Inhibition of CRISPR-Cas9 with Bacteriophage Proteins.

Authors:  Benjamin J Rauch; Melanie R Silvis; Judd F Hultquist; Christopher S Waters; Michael J McGregor; Nevan J Krogan; Joseph Bondy-Denomy
Journal:  Cell       Date:  2016-12-29       Impact factor: 41.582

Review 3.  Phage-exclusion enzymes: a bonanza of biochemical and cell biology reagents?

Authors:  L Snyder
Journal:  Mol Microbiol       Date:  1995-02       Impact factor: 3.501

4.  Structural basis of Cas3 inhibition by the bacteriophage protein AcrF3.

Authors:  Xiaofei Wang; Deqiang Yao; Jin-Gen Xu; A-Rong Li; Jianpo Xu; Panhan Fu; Yan Zhou; Yongqun Zhu
Journal:  Nat Struct Mol Biol       Date:  2016-07-25       Impact factor: 15.369

5.  Multidimensional chemical control of CRISPR-Cas9.

Authors:  Basudeb Maji; Christopher L Moore; Bernd Zetsche; Sara E Volz; Feng Zhang; Matthew D Shoulders; Amit Choudhary
Journal:  Nat Chem Biol       Date:  2016-10-31       Impact factor: 15.040

6.  C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector.

Authors:  Omar O Abudayyeh; Jonathan S Gootenberg; Silvana Konermann; Julia Joung; Ian M Slaymaker; David B T Cox; Sergey Shmakov; Kira S Makarova; Ekaterina Semenova; Leonid Minakhin; Konstantin Severinov; Aviv Regev; Eric S Lander; Eugene V Koonin; Feng Zhang
Journal:  Science       Date:  2016-06-02       Impact factor: 47.728

7.  Cryo-EM Structures Reveal Mechanism and Inhibition of DNA Targeting by a CRISPR-Cas Surveillance Complex.

Authors:  Tai Wei Guo; Alberto Bartesaghi; Hui Yang; Veronica Falconieri; Prashant Rao; Alan Merk; Edward T Eng; Ashleigh M Raczkowski; Tara Fox; Lesley A Earl; Dinshaw J Patel; Sriram Subramaniam
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

8.  Disabling Cas9 by an anti-CRISPR DNA mimic.

Authors:  Jiyung Shin; Fuguo Jiang; Jun-Jie Liu; Nicolas L Bray; Benjamin J Rauch; Seung Hyun Baik; Eva Nogales; Joseph Bondy-Denomy; Jacob E Corn; Jennifer A Doudna
Journal:  Sci Adv       Date:  2017-07-12       Impact factor: 14.136

9.  Phylogenetic Distribution of CRISPR-Cas Systems in Antibiotic-Resistant Pseudomonas aeruginosa.

Authors:  Alex van Belkum; Leah B Soriaga; Matthew C LaFave; Srividya Akella; Jean-Baptiste Veyrieras; E Magda Barbu; Dee Shortridge; Bernadette Blanc; Gregory Hannum; Gilles Zambardi; Kristofer Miller; Mark C Enright; Nathalie Mugnier; Daniel Brami; Stéphane Schicklin; Martina Felderman; Ariel S Schwartz; Toby H Richardson; Todd C Peterson; Bolyn Hubby; Kyle C Cady
Journal:  mBio       Date:  2015-11-24       Impact factor: 7.867

10.  Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system.

Authors:  Joe Bondy-Denomy; April Pawluk; Karen L Maxwell; Alan R Davidson
Journal:  Nature       Date:  2012-12-16       Impact factor: 49.962

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  19 in total

1.  Genome-wide correlation analysis suggests different roles of CRISPR-Cas systems in the acquisition of antibiotic resistance genes in diverse species.

Authors:  Saadlee Shehreen; Te-Yuan Chyou; Peter C Fineran; Chris M Brown
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-05-13       Impact factor: 6.237

Review 2.  Chemistry of Class 1 CRISPR-Cas effectors: Binding, editing, and regulation.

Authors:  Tina Y Liu; Jennifer A Doudna
Journal:  J Biol Chem       Date:  2020-08-14       Impact factor: 5.157

3.  Crystal structure of the anti-CRISPR, AcrIIC4.

Authors:  Gi Eob Kim; So Yeon Lee; Hyun Ho Park
Journal:  Protein Sci       Date:  2021-10-29       Impact factor: 6.725

4.  CRISPR-SCReT (CRISPR-Stop Codon Read Through) method to control Cas9 expression for gene editing.

Authors:  Pouiré Yaméogo; Benjamin L Duchêne; Nathalie Majeau; Jacques P Tremblay
Journal:  Gene Ther       Date:  2021-10-01       Impact factor: 5.250

Review 5.  Precision Control of CRISPR-Cas9 Using Small Molecules and Light.

Authors:  Soumyashree A Gangopadhyay; Kurt J Cox; Debasish Manna; Donghyun Lim; Basudeb Maji; Qingxuan Zhou; Amit Choudhary
Journal:  Biochemistry       Date:  2019-01-22       Impact factor: 3.162

6.  Systematic discovery of natural CRISPR-Cas12a inhibitors.

Authors:  Kyle E Watters; Christof Fellmann; Hua B Bai; Shawn M Ren; Jennifer A Doudna
Journal:  Science       Date:  2018-09-06       Impact factor: 47.728

Review 7.  Single-Base Resolution: Increasing the Specificity of the CRISPR-Cas System in Gene Editing.

Authors:  Roy Rabinowitz; Daniel Offen
Journal:  Mol Ther       Date:  2020-11-26       Impact factor: 11.454

8.  A programmable CRISPR/Cas9-based phage defense system for Escherichia coli BL21(DE3).

Authors:  Li Liu; Dongdong Zhao; Lijun Ye; Tao Zhan; Bin Xiong; Muzi Hu; Changhao Bi; Xueli Zhang
Journal:  Microb Cell Fact       Date:  2020-07-03       Impact factor: 5.328

9.  AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses.

Authors:  Haidong Yi; Le Huang; Bowen Yang; Javi Gomez; Han Zhang; Yanbin Yin
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

10.  Temperature-Responsive Competitive Inhibition of CRISPR-Cas9.

Authors:  Fuguo Jiang; Jun-Jie Liu; Beatriz A Osuna; Michael Xu; Joel D Berry; Benjamin J Rauch; Eva Nogales; Joseph Bondy-Denomy; Jennifer A Doudna
Journal:  Mol Cell       Date:  2018-12-27       Impact factor: 17.970

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