| Literature DB >> 29234020 |
Peggy Sekula1, Katja Dettmer2, Franziska C Vogl2, Wolfram Gronwald2, Lisa Ellmann2, Robert P Mohney3, Kai-Uwe Eckardt4, Karsten Suhre5, Gabi Kastenmüller6,7,8, Peter J Oefner2, Anna Köttgen9.
Abstract
Using a non-targeted metabolomics platform, we recently identified C-mannosyltryptophan and pseudouridine as non-traditional kidney function markers. The aims of this study were to obtain absolute concentrations of both metabolites in blood and urine from individuals with and without CKD to provide reference ranges and to assess their fractional excretions (FE), and to assess the agreement with their non-targeted counterparts. In individuals without/with CKD, mean plasma and urine concentrations for C-mannosyltryptophan were 0.26/0.72 µmol/L and 3.39/4.30 µmol/mmol creatinine, respectively. The respective concentrations for pseudouridine were 2.89/5.67 µmol/L and 39.7/33.9 µmol/mmol creatinine. Median (25th, 75th percentiles) FEs were 70.8% (65.6%, 77.8%) for C-mannosyltryptophan and 76.0% (68.6%, 82.4%) for pseudouridine, indicating partial net reabsorption. Association analyses validated reported associations between single metabolites and eGFR. Targeted measurements of both metabolites agreed well with the non-targeted measurements, especially in urine. Agreement for composite nephrological measures FE and urinary metabolite-to-creatinine ratio was lower, but could be improved by replacing non-targeted creatinine measurements with a standard clinical creatinine test. In summary, targeted quantification and additional characterization in relevant populations are necessary steps in the translation of non-traditional biomarkers in nephrology from non-targeted discovery to clinical application.Entities:
Mesh:
Substances:
Year: 2017 PMID: 29234020 PMCID: PMC5727198 DOI: 10.1038/s41598-017-17107-5
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Schematic representation of the project’s data sources and aims.
Description of study populations.
| Study | QMDiab | GCKD | |
|---|---|---|---|
| Health status | Non-CKD individuals | CKD patients | |
| Ancestry | Arab/Asian | European | |
| Population size | N | 111 | 382 |
| Sex, male | N (%) | 46 (41%) | 235 (62%) |
| Age, years | Mean (SD) | 38.3 (11.6) | 59.5 (12.0) |
| Body mass index, kg/m² | Mean (SD) | 28.3 (5.1) | 30.1 (5.9) |
| Blood measures* | |||
| - Creatinine, mg/dL | Mean (SD) | 0.80 (0.18) | 1.47 (0.43) |
| - Cystatin C, mg/L | Mean (SD) | NA | 1.54 (0.42) |
| eGFR CKD-EPI, mL/min/1.73 m² | |||
| - based on creatinine | Mean (SD) | 104.0 (15.7) | 50.9 (17.6) |
| - based on cystatin C | Mean (SD) | NA | 47.6 (17.0) |
| Urine measures* | |||
| - Creatinine, mg/dL | Mean (SD) | 139.2 (84.4) | 78.7 (52.9) |
| - UACR, mg/g | Median (IQR) | NA | 62.5 (11.9–450.4) |
*Creatinine in both blood (serum in GCKD and plasma for QMDiab) and urine were measured using a calibrated, enzymatic, standard clinical laboratory assay. Creatinine conversion: 1 mg/dL = 88.4 µmol/L. IQR – interquartile range; NA – not available.
Characterization of C-mannosyltryptophan and Pseudouridine.
| Targeted LC/MS measurements | N | Mini-mum | Q1 | Median | Q3 | Maxi-mum | Mean(SD) |
|---|---|---|---|---|---|---|---|
|
| |||||||
| C-mannosyltryptophan | |||||||
| - Non-CKD individuals | 111 | 0.16 | 0.22 | 0.25 | 0.29 | 0.42 | 0.26 (0.05) |
| - CKD patients | 328 | 0.23 | 0.51 | 0.67 | 0.86 | 1.92 | 0.72 (0.28) |
| Pseudouridine | |||||||
| - Non-CKD individuals | 111 | 2.00 | 2.53 | 2.86 | 3.18 | 4.75 | 2.89 (0.52) |
| - CKD patients | 329 | 1.91 | 4.41 | 5.44 | 6.59 | 12.9 | 5.67 (1.84) |
|
| |||||||
| C-mannosyltryptophan | |||||||
| - Non-CKD individuals | 111 | 1.66 | 2.67 | 3.37 | 3.89 | 5.08 | 3.39 (0.80) |
| - CKD patients | 377 | 2.12 | 3.59 | 4.18 | 4.81 | 10.9 | 4.30 (1.05) |
| Pseudouridine | |||||||
| - Non-CKD individuals | 111 | 23.6 | 35.1 | 39.7 | 43.2 | 56.6 | 39.7 (6.74) |
| - CKD patients | 377 | 21.5 | 29.5 | 33.0 | 37.5 | 61.6 | 33.9 (6.63) |
|
| |||||||
| C-mannosyltryptophan | |||||||
| - Non-CKD individuals | 111 | 51.0 | 65.6 | 70.8 | 77.8 | 107.0 | 71.8 (9.43) |
| - CKD patients | 329 | 34.9 | 63.8 | 72.7 | 85.8 | 126.8 | 75.8 (17.4) |
| Pseudouridine | |||||||
| - Non-CKD individuals | 111 | 56.0 | 68.6 | 76.0 | 82.4 | 100.2 | 76.1 (9.66) |
| - CKD patients | 329 | 42.5 | 65.2 | 73.7 | 83.7 | 115.4 | 74.6 (13.5) |
Mean (SD) of targeted LC/MS measurements of creatinine (µmol/L): (a) Non-CKD individuals: plasma 56.5 (13.65), urine 11,220 (6,344.27), (b) CKD patients: plasma 124.3 (35.74), urine 6,399.0 (3,946.15).
Figure 2Distributions of targeted measurements of C-mannosyltryptophan and pseudouridine and their fractional excretion in individuals with and without CKD. (A) Plasma concentrations, (B) Urine concentrations, (C) Fractional excretion.
Correlation of metabolites to each other and to standard measurements in CKD patients.
| Spearman correlation coefficient | Targeted LC/MS quantification | ||||||
|---|---|---|---|---|---|---|---|
| Plasma: Creatinine | Plasma: C-mannosyltryptophan | Plasma: Pseudouridine | Urine: Creatinine | Urine: C-mannosyltryptophan | Urine: Pseudouridine | ||
| Targeted LC/MS quantification | Plasma: Creatinine | 1 | |||||
| Plasma: C-mannosyltryptophan | 0.58 | 1 | |||||
| Plasma: Pseudouridine | 0.71 | 0.88 | 1 | ||||
| Urine: Creatinine | 0.01* | −0.06 | −0.04 | 1* | |||
| Urine: C-mannosyltryptophan | −0.21 | 0.36 | 0.23 | 0.94* | 1 | ||
| Urine: Pseudouridine | −0.23 | 0.22 | 0.19 | 0.95* | 0.69 | 1 | |
| Stand. clinical laboratory measurement | Serum: Creatinine | 0.96 | 0.63 | 0.74 | 0.06* | −0.16 | −0.23 |
| Serum: Cystatin C | 0.71 | 0.79 | 0.85 | −0.02* | 0.21 | 0.11 | |
| eGFR (based on serum creatinine) | −0.87 | −0.70 | −0.77 | 0.00* | −0.04 | 0.08 | |
| eGFR (based on cystatin C) | −0.66 | −0.79 | −0.84 | 0.02* | −0.28 | −0.15 | |
| Urine: Creatinine | 0.04 | −0.04 | −0.04 | 0.96* | 0.89* | 0.91* | |
| Urine: UACR | 0.06 | 0.00 | 0.04 | −0.20* | −0.01 | 0.10 | |
Units for targeted measurements: plasma - µmol/L, urine - µmol/mmol creatinine or µmol/L (if not standardized for dilution, indicated by *); Units for standard clinical laboratory: serum creatinine: mg/dL, serum cystatin C: mg/L, eGFR: mL/min/1.73 m², UACR: mg/g. UACR: urine albumin-to-creatinine ratio.
Figure 3Comparison of ranks of targeted and non-targeted mass spectrometric measurements of pseudouridine and creatinine as well as respective composite measures of pseudouridine in individuals without CKD. (A) Pseudouridine, (B) Creatinine, (C) Urinary pseudouridine-to-creatinine ratio, (D) Fractional excretion – original version: using creatinine measurements from respective platform, i.e. targeted or non-targeted, (E) Fractional excretion – adapted version: using standard clinical laboratory measurement of creatinine. SCC: Spearman correlation coefficient corresponding to slope of displayed regression line of rank-transformed measurements.