Literature DB >> 22874253

Designing and implementing a biobanking IT framework for multiple research scenarios.

Hans-Ulrich Prokosch1, Sebastian Mate, Jan Christoph, Andreas Beck, Felix Köpcke, Stefanie Stephan, Matthias W Beckmann, Tilman Rau, Arndt Hartmann, Bernd Wullich, Bernhard Breil, Kai-Uwe Eckardt, Stephanie Titze, Jens K Habermann, Josef Ingenerf, Michael Hackmann, Markus Ries, Thomas Bürkle, Thomas Ganslandt.   

Abstract

This paper presents a biobanking IT framework, comprising a set of integrated biobanking information technology components. It provides adaptable and scalable IT support for varying biobanking scenarios, workflows and projects, while avoiding redundancy in data and technology. Feasibility of this approach is illustrated by implementations for four different biobanking projects at Erlangen University Hospital and with cooperating partners in Münster and Lübeck.

Mesh：

Year:  2012        PMID： 22874253

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN： 0926-9630


  10 in total

Review 1.  [Biobanks, translational research and medical informatics].

Authors:  C Schüttler; R Jahns; U Prokosch; S Wach; B Wullich
Journal:  Urologie       Date:  2022-05-30

2.  Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.

Authors:  Yong Li; Peggy Sekula; Matthias Wuttke; Judith Wahrheit; Birgit Hausknecht; Ulla T Schultheiss; Wolfram Gronwald; Pascal Schlosser; Sara Tucci; Arif B Ekici; Ute Spiekerkoetter; Florian Kronenberg; Kai-Uwe Eckardt; Peter J Oefner; Anna Köttgen
Journal:  J Am Soc Nephrol       Date:  2018-03-15       Impact factor: 10.121

3.  Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.

Authors:  Pascal Schlosser; Yong Li; Peggy Sekula; Johannes Raffler; Franziska Grundner-Culemann; Maik Pietzner; Yurong Cheng; Matthias Wuttke; Inga Steinbrenner; Ulla T Schultheiss; Fruzsina Kotsis; Tim Kacprowski; Lukas Forer; Birgit Hausknecht; Arif B Ekici; Matthias Nauck; Uwe Völker; Gerd Walz; Peter J Oefner; Florian Kronenberg; Robert P Mohney; Michael Köttgen; Karsten Suhre; Kai-Uwe Eckardt; Gabi Kastenmüller; Anna Köttgen
Journal:  Nat Genet       Date:  2020-01-20       Impact factor: 38.330

4.  Genetics of osteopontin in patients with chronic kidney disease: The German Chronic Kidney Disease study.

Authors:  Yurong Cheng; Yong Li; Nora Scherer; Franziska Grundner-Culemann; Terho Lehtimäki; Binisha H Mishra; Olli T Raitakari; Matthias Nauck; Kai-Uwe Eckardt; Peggy Sekula; Ulla T Schultheiss
Journal:  PLoS Genet       Date:  2022-04-06       Impact factor: 5.917

5.  Ontology-based data integration between clinical and research systems.

Authors:  Sebastian Mate; Felix Köpcke; Dennis Toddenroth; Marcus Martin; Hans-Ulrich Prokosch; Thomas Bürkle; Thomas Ganslandt
Journal:  PLoS One       Date:  2015-01-14       Impact factor: 3.240

6.  From Discovery to Translation: Characterization of C-Mannosyltryptophan and Pseudouridine as Markers of Kidney Function.

Authors:  Peggy Sekula; Katja Dettmer; Franziska C Vogl; Wolfram Gronwald; Lisa Ellmann; Robert P Mohney; Kai-Uwe Eckardt; Karsten Suhre; Gabi Kastenmüller; Peter J Oefner; Anna Köttgen
Journal:  Sci Rep       Date:  2017-12-12       Impact factor: 4.379

7.  Evaluating Generalizability of a Biospecimen Informatics Approach: Support for Local Requirements and Best Practices.

Authors:  Cindy Chen; Regina T Wulff; Evan T Sholle; Gail J Roboz; David A Kraemer; Thomas R Campion
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2018-05-18

8.  Urine 6-Bromotryptophan: Associations with Genetic Variants and Incident End-Stage Kidney Disease.

Authors:  Peggy Sekula; Adrienne Tin; Ulla T Schultheiss; Seema Baid-Agrawal; Robert P Mohney; Inga Steinbrenner; Bing Yu; Shengyuan Luo; Eric Boerwinkle; Kai-Uwe Eckardt; Josef Coresh; Morgan E Grams; Anna Kӧttgen
Journal:  Sci Rep       Date:  2020-06-22       Impact factor: 4.379

9.  Rare genetic variants affecting urine metabolite levels link population variation to inborn errors of metabolism.

Authors:  Yurong Cheng; Pascal Schlosser; Johannes Hertel; Peggy Sekula; Peter J Oefner; Ute Spiekerkoetter; Johanna Mielke; Daniel F Freitag; Miriam Schmidts; Florian Kronenberg; Kai-Uwe Eckardt; Ines Thiele; Yong Li; Anna Köttgen
Journal:  Nat Commun       Date:  2021-02-11       Impact factor: 14.919

10.  Self-Reported Medication Use and Urinary Drug Metabolites in the German Chronic Kidney Disease (GCKD) Study.

Authors:  Fruzsina Kotsis; Ulla T Schultheiss; Matthias Wuttke; Pascal Schlosser; Johanna Mielke; Michael S Becker; Peter J Oefner; Edward D Karoly; Robert P Mohney; Kai-Uwe Eckardt; Peggy Sekula; Anna Köttgen
Journal:  J Am Soc Nephrol       Date:  2021-06-17       Impact factor: 14.978
  10 in total

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