Literature DB >> 29231168

Multiple sources of slow activity fluctuations in a bacterial chemosensory network.

Remy Colin1,2, Christelle Rosazza1,2, Ady Vaknin3, Victor Sourjik1,2.   

Abstract

Cellular networks are intrinsically subject to stochastic fluctuations, but analysis of the resulting noise remained largely limited to gene expression. The pathway controlling chemotaxis of Escherichia coli provides one example where posttranslational signaling noise has been deduced from cellular behavior. This noise was proposed to result from stochasticity in chemoreceptor methylation, and it is believed to enhance environment exploration by bacteria. Here we combined single-cell FRET measurements with analysis based on the fluctuation-dissipation theorem (FDT) to characterize origins of activity fluctuations within the chemotaxis pathway. We observed surprisingly large methylation-independent thermal fluctuations of receptor activity, which contribute to noise comparably to the energy-consuming methylation dynamics. Interactions between clustered receptors involved in amplification of chemotactic signals are also necessary to produce the observed large activity fluctuations. Our work thus shows that the high response sensitivity of this cellular pathway also increases its susceptibility to noise, from thermal and out-of-equilibrium processes.
© 2017, Colin et al.

Entities:  

Keywords:  E. coli; Levy walks; bacterial chemotaxis; cell networks dynamics; computational biology; fluctuation dissipation relation; infectious disease; microbiology; out-of-equilibrium; single-cell FRET; systems biology

Mesh:

Substances:

Year:  2017        PMID: 29231168      PMCID: PMC5809148          DOI: 10.7554/eLife.26796

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  89 in total

1.  Comparison of a hair bundle's spontaneous oscillations with its response to mechanical stimulation reveals the underlying active process.

Authors:  P Martin; A J Hudspeth; F Jülicher
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

2.  Receptor sensitivity in bacterial chemotaxis.

Authors:  Victor Sourjik; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

3.  Design principles of a bacterial signalling network.

Authors:  Markus Kollmann; Linda Løvdok; Kilian Bartholomé; Jens Timmer; Victor Sourjik
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

4.  An allosteric model for heterogeneous receptor complexes: understanding bacterial chemotaxis responses to multiple stimuli.

Authors:  Bernardo A Mello; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-17       Impact factor: 11.205

5.  Chemosensing in Escherichia coli: two regimes of two-state receptors.

Authors:  Juan E Keymer; Robert G Endres; Monica Skoge; Yigal Meir; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

6.  Intracellular micro-rheology probed by micron-sized wires.

Authors:  Loudjy Chevry; Rémy Colin; Bérengère Abou; Jean-François Berret
Journal:  Biomaterials       Date:  2013-06-05       Impact factor: 12.479

7.  Transient response to chemotactic stimuli in Escherichia coli.

Authors:  H C Berg; P M Tedesco
Journal:  Proc Natl Acad Sci U S A       Date:  1975-08       Impact factor: 11.205

Review 8.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

9.  Direct Correlation between Motile Behavior and Protein Abundance in Single Cells.

Authors:  Yann S Dufour; Sébastien Gillet; Nicholas W Frankel; Douglas B Weibel; Thierry Emonet
Journal:  PLoS Comput Biol       Date:  2016-09-06       Impact factor: 4.475

10.  Variable sizes of Escherichia coli chemoreceptor signaling teams.

Authors:  Robert G Endres; Olga Oleksiuk; Clinton H Hansen; Yigal Meir; Victor Sourjik; Ned S Wingreen
Journal:  Mol Syst Biol       Date:  2008-08-05       Impact factor: 11.429

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  12 in total

Review 1.  New Twists and Turns in Bacterial Locomotion and Signal Transduction.

Authors:  Kylie J Watts; Ady Vaknin; Clay Fuqua; Barbara I Kazmierczak
Journal:  J Bacteriol       Date:  2019-09-20       Impact factor: 3.490

2.  Suppression of cell-cell variation by cooperative interaction of phosphatase and response regulator.

Authors:  Xiang Liu; Rongjing Zhang; Junhua Yuan
Journal:  Biophys J       Date:  2021-12-09       Impact factor: 4.033

Review 3.  The ecological roles of bacterial chemotaxis.

Authors:  Johannes M Keegstra; Francesco Carrara; Roman Stocker
Journal:  Nat Rev Microbiol       Date:  2022-03-15       Impact factor: 78.297

4.  Escherichia coli chemotaxis is information limited.

Authors:  H H Mattingly; K Kamino; B B Machta; T Emonet
Journal:  Nat Phys       Date:  2021-11-25       Impact factor: 19.684

5.  Network Topologies That Can Achieve Dual Function of Adaptation and Noise Attenuation.

Authors:  Lingxia Qiao; Wei Zhao; Chao Tang; Qing Nie; Lei Zhang
Journal:  Cell Syst       Date:  2019-09-18       Impact factor: 10.304

Review 6.  Behavioral Variability and Phenotypic Diversity in Bacterial Chemotaxis.

Authors:  Adam James Waite; Nicholas W Frankel; Thierry Emonet
Journal:  Annu Rev Biophys       Date:  2018-04-04       Impact factor: 12.981

7.  Conformational shifts in a chemoreceptor helical hairpin control kinase signaling in Escherichia coli.

Authors:  Qun Gao; Anchun Cheng; John S Parkinson
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-17       Impact factor: 11.205

8.  Maximal information transmission is compatible with ultrasensitive biological pathways.

Authors:  Gabriele Micali; Robert G Endres
Journal:  Sci Rep       Date:  2019-11-15       Impact factor: 4.379

9.  Gene expression noise in a complex artificial toxin expression system.

Authors:  Alexandra Goetz; Andreas Mader; Benedikt von Bronk; Anna S Weiss; Madeleine Opitz
Journal:  PLoS One       Date:  2020-01-21       Impact factor: 3.240

10.  Fluctuations in Intracellular CheY-P Concentration Coordinate Reversals of Flagellar Motors in E. coli.

Authors:  Yong-Suk Che; Takashi Sagawa; Yuichi Inoue; Hiroto Takahashi; Tatsuki Hamamoto; Akihiko Ishijima; Hajime Fukuoka
Journal:  Biomolecules       Date:  2020-11-12
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