Literature DB >> 29225334

A change of view: homologous recombination at single-molecule resolution.

Kyle Kaniecki1, Luisina De Tullio2,3, Eric C Greene3.   

Abstract

Genetic recombination occurs in all organisms and is vital for genome stability. Indeed, in humans, aberrant recombination can lead to diseases such as cancer. Our understanding of homologous recombination is built upon more than a century of scientific inquiry, but achieving a more complete picture using ensemble biochemical and genetic approaches is hampered by population heterogeneity and transient recombination intermediates. Recent advances in single-molecule and super-resolution microscopy methods help to overcome these limitations and have led to new and refined insights into recombination mechanisms, including a detailed understanding of DNA helicase function and synaptonemal complex structure. The ability to view cellular processes at single-molecule resolution promises to transform our understanding of recombination and related processes.

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Year:  2017        PMID: 29225334      PMCID: PMC5866458          DOI: 10.1038/nrg.2017.92

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  149 in total

Review 1.  Some disassembly required: role of DNA translocases in the disruption of recombination intermediates and dead-end complexes.

Authors:  Lorraine S Symington; Wolf-Dietrich Heyer
Journal:  Genes Dev       Date:  2006-09-15       Impact factor: 11.361

2.  Direct observation of individual RecA filaments assembling on single DNA molecules.

Authors:  Roberto Galletto; Ichiro Amitani; Ronald J Baskin; Stephen C Kowalczykowski
Journal:  Nature       Date:  2006-09-20       Impact factor: 49.962

3.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

Review 4.  Advances in single-molecule fluorescence methods for molecular biology.

Authors:  Chirlmin Joo; Hamza Balci; Yuji Ishitsuka; Chittanon Buranachai; Taekjip Ha
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

Review 5.  Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism.

Authors:  M S Wold
Journal:  Annu Rev Biochem       Date:  1997       Impact factor: 23.643

Review 6.  DNA-pairing and annealing processes in homologous recombination and homology-directed repair.

Authors:  Scott W Morrical
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-02-02       Impact factor: 10.005

Review 7.  Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae.

Authors:  F Pâques; J E Haber
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

8.  High copy number suppression of the meiotic arrest caused by a dmc1 mutation: REC114 imposes an early recombination block and RAD54 promotes a DMC1-independent DSB repair pathway.

Authors:  D K Bishop; Y Nikolski; J Oshiro; J Chon; M Shinohara; X Chen
Journal:  Genes Cells       Date:  1999-08       Impact factor: 1.891

9.  Protein structure. Engineering of a superhelicase through conformational control.

Authors:  Sinan Arslan; Rustem Khafizov; Christopher D Thomas; Yann R Chemla; Taekjip Ha
Journal:  Science       Date:  2015-04-17       Impact factor: 47.728

Review 10.  An Overview of the Molecular Mechanisms of Recombinational DNA Repair.

Authors:  Stephen C Kowalczykowski
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-11-02       Impact factor: 10.005

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  22 in total

Review 1.  Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes.

Authors:  Hannah L Klein; Kenny K H Ang; Michelle R Arkin; Emily C Beckwitt; Yi-Hsuan Chang; Jun Fan; Youngho Kwon; Michael J Morten; Sucheta Mukherjee; Oliver J Pambos; Hafez El Sayyed; Elizabeth S Thrall; João P Vieira-da-Rocha; Quan Wang; Shuang Wang; Hsin-Yi Yeh; Julie S Biteen; Peter Chi; Wolf-Dietrich Heyer; Achillefs N Kapanidis; Joseph J Loparo; Terence R Strick; Patrick Sung; Bennett Van Houten; Hengyao Niu; Eli Rothenberg
Journal:  Microb Cell       Date:  2019-01-07

2.  Identification of Multiple Kinetic Populations of DNA-Binding Proteins in Live Cells.

Authors:  Han N Ho; Daniel Zalami; Jürgen Köhler; Antoine M van Oijen; Harshad Ghodke
Journal:  Biophys J       Date:  2019-07-19       Impact factor: 4.033

Review 3.  The molecular basis and disease relevance of non-homologous DNA end joining.

Authors:  Bailin Zhao; Eli Rothenberg; Dale A Ramsden; Michael R Lieber
Journal:  Nat Rev Mol Cell Biol       Date:  2020-10-19       Impact factor: 94.444

Review 4.  Applications of genome editing technology in the targeted therapy of human diseases: mechanisms, advances and prospects.

Authors:  Hongyi Li; Yang Yang; Weiqi Hong; Mengyuan Huang; Min Wu; Xia Zhao
Journal:  Signal Transduct Target Ther       Date:  2020-01-03

5.  Human replication protein A induces dynamic changes in single-stranded DNA and RNA structures.

Authors:  Qing-Man Wang; Yan-Tao Yang; Yi-Ran Wang; Bo Gao; Xu-Guang Xi; Xi-Miao Hou
Journal:  J Biol Chem       Date:  2019-07-26       Impact factor: 5.157

Review 6.  Insights into homology search from cryo-EM structures of RecA-DNA recombination intermediates.

Authors:  Haijuan Yang; Nikola P Pavletich
Journal:  Curr Opin Genet Dev       Date:  2021-09-27       Impact factor: 5.578

7.  DDX41 is required for cGAS-STING activation against DNA virus infection.

Authors:  Ravi Shankar Singh; Venkatasubramanian Vidhyasagar; Shizhuo Yang; Ananna Bhadra Arna; Manisha Yadav; Aanchal Aggarwal; Alexya N Aguilera; Satoru Shinriki; Kalpana Kalyanasundaram Bhanumathy; Kannupriya Pandey; Aizhang Xu; Noreen Rapin; Mark Bosch; John DeCoteau; Jim Xiang; Franco J Vizeacoumar; Yan Zhou; Vikram Misra; Hirotaka Matsui; Susan R Ross; Yuliang Wu
Journal:  Cell Rep       Date:  2022-05-24       Impact factor: 9.995

8.  Direct unfolding of RuvA-HJ complex at the single-molecule level.

Authors:  Dalton R Gibbs; Roaa Mahmoud; Anisa Kaur; Soma Dhakal
Journal:  Biophys J       Date:  2021-03-16       Impact factor: 4.033

9.  Single molecule microscopy reveals key physical features of repair foci in living cells.

Authors:  Judith Miné-Hattab; Mathias Heltberg; Marie Villemeur; Chloé Guedj; Thierry Mora; Aleksandra M Walczak; Maxime Dahan; Angela Taddei
Journal:  Elife       Date:  2021-02-05       Impact factor: 8.140

Review 10.  DNA Damage-Induced Neurodegeneration in Accelerated Ageing and Alzheimer's Disease.

Authors:  Heling Wang; Sofie Lautrup; Domenica Caponio; Jianying Zhang; Evandro F Fang
Journal:  Int J Mol Sci       Date:  2021-06-23       Impact factor: 5.923

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