Literature DB >> 25883358

Protein structure. Engineering of a superhelicase through conformational control.

Sinan Arslan1, Rustem Khafizov1, Christopher D Thomas2, Yann R Chemla1, Taekjip Ha3.   

Abstract

Conformational control of biomolecular activities can reveal functional insights and enable the engineering of novel activities. Here we show that conformational control through intramolecular cross-linking of a helicase monomer with undetectable unwinding activity converts it into a superhelicase that can unwind thousands of base pairs processively, even against a large opposing force. A natural partner that enhances the helicase activity is shown to achieve its stimulating role also by selectively stabilizing the active conformation. Our work provides insight into the regulation of nucleic acid unwinding activity and introduces a monomeric superhelicase without nuclease activities, which may be useful for biotechnological applications.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 25883358      PMCID: PMC4417355          DOI: 10.1126/science.aaa0445

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  26 in total

1.  Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism.

Authors:  S S Velankar; P Soultanas; M S Dillingham; H S Subramanya; D B Wigley
Journal:  Cell       Date:  1999-04-02       Impact factor: 41.582

2.  E. coli Rep oligomers are required to initiate DNA unwinding in vitro.

Authors:  W Cheng; J Hsieh; K M Brendza; T M Lohman
Journal:  J Mol Biol       Date:  2001-07-06       Impact factor: 5.469

3.  Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase.

Authors:  Taekjip Ha; Ivan Rasnik; Wei Cheng; Hazen P Babcock; George H Gauss; Timothy M Lohman; Steven Chu
Journal:  Nature       Date:  2002-10-10       Impact factor: 49.962

4.  Single-molecule assay reveals strand switching and enhanced processivity of UvrD.

Authors:  Marie-Noëlle Dessinges; Timothée Lionnet; Xu Guang Xi; David Bensimon; Vincent Croquette
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-12       Impact factor: 11.205

5.  Forward and reverse motion of single RecBCD molecules on DNA.

Authors:  Thomas T Perkins; Hung-Wen Li; Ravindra V Dalal; Jeff Gelles; Steven M Block
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

6.  Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase.

Authors:  J A Ali; T M Lohman
Journal:  Science       Date:  1997-01-17       Impact factor: 47.728

7.  Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP.

Authors:  S Korolev; J Hsieh; G H Gauss; T M Lohman; G Waksman
Journal:  Cell       Date:  1997-08-22       Impact factor: 41.582

8.  Elastic coupling between RNA degradation and unwinding by an exoribonuclease.

Authors:  Gwangrog Lee; Matthew A Bratkowski; Fang Ding; Ailong Ke; Taekjip Ha
Journal:  Science       Date:  2012-06-29       Impact factor: 47.728

9.  The 2B domain of the Escherichia coli Rep protein is not required for DNA helicase activity.

Authors:  Wei Cheng; Katherine M Brendza; George H Gauss; Sergey Korolev; Gabriel Waksman; Timothy M Lohman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-19       Impact factor: 11.205

10.  A Dimer of Escherichia coli UvrD is the active form of the helicase in vitro.

Authors:  Nasib K Maluf; Christopher J Fischer; Timothy M Lohman
Journal:  J Mol Biol       Date:  2003-01-31       Impact factor: 5.469

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  46 in total

1.  Utp14 Recruits and Activates the RNA Helicase Dhr1 To Undock U3 snoRNA from the Preribosome.

Authors:  Jieyi Zhu; Xin Liu; Margarida Anjos; Carl C Correll; Arlen W Johnson
Journal:  Mol Cell Biol       Date:  2016-01-04       Impact factor: 4.272

2.  Monitoring co-transcriptional folding of riboswitches through helicase unwinding.

Authors:  Christopher P Jones; Subrata Panja; Sarah A Woodson; Adrian R Ferré-D'Amaré
Journal:  Methods Enzymol       Date:  2019-06-07       Impact factor: 1.600

3.  UvrD helicase activation by MutL involves rotation of its 2B subdomain.

Authors:  Yerdos A Ordabayev; Binh Nguyen; Alexander G Kozlov; Haifeng Jia; Timothy M Lohman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-30       Impact factor: 11.205

Review 4.  A mechanistic study of helicases with magnetic traps.

Authors:  Samar Hodeib; Saurabh Raj; Maria Manosas; Weiting Zhang; Debjani Bagchi; Bertrand Ducos; Francesca Fiorini; Joanne Kanaan; Hervé Le Hir; Jean-François Allemand; David Bensimon; Vincent Croquette
Journal:  Protein Sci       Date:  2017-06-13       Impact factor: 6.725

5.  Mimicking Co-Transcriptional RNA Folding Using a Superhelicase.

Authors:  Boyang Hua; Subrata Panja; Yanbo Wang; Sarah A Woodson; Taekjip Ha
Journal:  J Am Chem Soc       Date:  2018-08-03       Impact factor: 15.419

6.  F1-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements.

Authors:  Mitsuhiro Sugawa; Kei-Ichi Okazaki; Masaru Kobayashi; Takashi Matsui; Gerhard Hummer; Tomoko Masaike; Takayuki Nishizaka
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-10       Impact factor: 11.205

Review 7.  Probing Nature's Nanomachines One Molecule at a Time.

Authors:  Taekjip Ha
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

8.  Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition.

Authors:  Yang-Xue Dai; Wei-Fei Chen; Na-Nv Liu; Fang-Yuan Teng; Hai-Lei Guo; Xi-Miao Hou; Shuo-Xing Dou; Stephane Rety; Xu-Guang Xi
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

9.  Large domain movements upon UvrD dimerization and helicase activation.

Authors:  Binh Nguyen; Yerdos Ordabayev; Joshua E Sokoloski; Elizabeth Weiland; Timothy M Lohman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-30       Impact factor: 11.205

10.  Branched unwinding mechanism of the Pif1 family of DNA helicases.

Authors:  Saurabh P Singh; Andrea Soranno; Melanie A Sparks; Roberto Galletto
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-19       Impact factor: 11.205

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