Literature DB >> 29220475

Improving average ranking precision in user searches for biomedical research datasets.

Douglas Teodoro1,2, Luc Mottin1,2, Julien Gobeill1,2, Arnaud Gaudinat2, Thérèse Vachon3, Patrick Ruch1,2.   

Abstract

Database URL: https://biocaddie.org/benchmark-data.
© The Author(s) 2017. Published by Oxford University Press.

Entities:  

Mesh：

Year:  2017        PMID： 29220475      PMCID： PMC5714153          DOI： 10.1093/database/bax083

Source DB:  PubMed          Journal:  Database (Oxford)        ISSN： 1758-0463            Impact factor:   3.451


  17 in total

1.  U.S. science policy. Agencies rally to tackle big data.

Authors:  Jeffrey Mervis
Journal:  Science       Date:  2012-04-06       Impact factor: 47.728

2.  The NCBI dbGaP database of genotypes and phenotypes.

Authors:  Matthew D Mailman; Michael Feolo; Yumi Jin; Masato Kimura; Kimberly Tryka; Rinat Bagoutdinov; Luning Hao; Anne Kiang; Justin Paschall; Lon Phan; Natalia Popova; Stephanie Pretel; Lora Ziyabari; Moira Lee; Yu Shao; Zhen Y Wang; Karl Sirotkin; Minghong Ward; Michael Kholodov; Kerry Zbicz; Jeffrey Beck; Michael Kimelman; Sergey Shevelev; Don Preuss; Eugene Yaschenko; Alan Graeff; James Ostell; Stephen T Sherry
Journal:  Nat Genet       Date:  2007-10       Impact factor: 38.330

3.  Biomedical data management: a proposal framework.

Authors:  Douglas Teodoro; Rémy Choquet; Emilie Pasche; Julien Gobeill; Christel Daniel; Patrick Ruch; Christian Lovis
Journal:  Stud Health Technol Inform       Date:  2009

4.  QA-driven guidelines generation for bacteriotherapy.

Authors:  Emilie Pasche; Douglas Teodoro; Julien Gobeill; Patrick Ruch; Christian Lovis
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

5.  An advanced search engine for patent analytics in medicinal chemistry.

Authors:  Emilie Pasche; Julien Gobeill; Douglas Teodoro; Arnaud Gaudinat; Dina Vishnykova; Christian Lovis; Patrick Ruch
Journal:  Stud Health Technol Inform       Date:  2012

6.  The European Genome-phenome Archive of human data consented for biomedical research.

Authors:  Ilkka Lappalainen; Jeff Almeida-King; Vasudev Kumanduri; Alexander Senf; John Dylan Spalding; Saif Ur-Rehman; Gary Saunders; Jag Kandasamy; Mario Caccamo; Rasko Leinonen; Brendan Vaughan; Thomas Laurent; Francis Rowland; Pablo Marin-Garcia; Jonathan Barker; Petteri Jokinen; Angel Carreño Torres; Jordi Rambla de Argila; Oscar Martinez Llobet; Ignacio Medina; Marc Sitges Puy; Mario Alberich; Sabela de la Torre; Arcadi Navarro; Justin Paschall; Paul Flicek
Journal:  Nat Genet       Date:  2015-07       Impact factor: 38.330

7.  Public availability of published research data in high-impact journals.

Authors:  Alawi A Alsheikh-Ali; Waqas Qureshi; Mouaz H Al-Mallah; John P A Ioannidis
Journal:  PLoS One       Date:  2011-09-07       Impact factor: 3.240

8.  Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation.

Authors:  Douglas Teodoro; Emilie Pasche; Julien Gobeill; Stéphane Emonet; Patrick Ruch; Christian Lovis
Journal:  J Med Internet Res       Date:  2012-05-29       Impact factor: 5.428

9.  When data sharing gets close to 100%: what human paleogenetics can teach the open science movement.

Authors:  Paolo Anagnostou; Marco Capocasa; Nicola Milia; Emanuele Sanna; Cinzia Battaggia; Daniela Luzi; Giovanni Destro Bisol
Journal:  PLoS One       Date:  2015-03-23       Impact factor: 3.240

10.  PhenDisco: phenotype discovery system for the database of genotypes and phenotypes.

Authors:  Son Doan; Ko-Wei Lin; Mike Conway; Lucila Ohno-Machado; Alex Hsieh; Stephanie Feudjio Feupe; Asher Garland; Mindy K Ross; Xiaoqian Jiang; Seena Farzaneh; Rebecca Walker; Neda Alipanah; Jing Zhang; Hua Xu; Hyeon-Eui Kim
Journal:  J Am Med Inform Assoc       Date:  2013-08-29       Impact factor: 4.497
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  3 in total

1.  Baseline and extensions approach to information retrieval of complex medical data: Poznan's approach to the bioCADDIE 2016.

Authors:  Artur Cieslewicz; Jakub Dutkiewicz; Czeslaw Jedrzejek
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

2.  Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt.

Authors:  Aurore Britan; Isabelle Cusin; Valérie Hinard; Luc Mottin; Emilie Pasche; Julien Gobeill; Valentine Rech de Laval; Anne Gleizes; Daniel Teixeira; Pierre-André Michel; Patrick Ruch; Pascale Gaudet
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

3.  UPCLASS: a deep learning-based classifier for UniProtKB entry publications.

Authors:  Douglas Teodoro; Julien Knafou; Nona Naderi; Emilie Pasche; Julien Gobeill; Cecilia N Arighi; Patrick Ruch
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451
  3 in total

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