Literature DB >> 26111507

The European Genome-phenome Archive of human data consented for biomedical research.

Ilkka Lappalainen1, Jeff Almeida-King1, Vasudev Kumanduri1, Alexander Senf1, John Dylan Spalding1, Saif Ur-Rehman1, Gary Saunders1, Jag Kandasamy1, Mario Caccamo1, Rasko Leinonen1, Brendan Vaughan1, Thomas Laurent1, Francis Rowland1, Pablo Marin-Garcia1, Jonathan Barker1, Petteri Jokinen1, Angel Carreño Torres2, Jordi Rambla de Argila2, Oscar Martinez Llobet2, Ignacio Medina1, Marc Sitges Puy2, Mario Alberich2, Sabela de la Torre2, Arcadi Navarro3, Justin Paschall1, Paul Flicek1.   

Abstract

Entities:  

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Year:  2015        PMID： 26111507      PMCID： PMC5426533          DOI： 10.1038/ng.3312

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  22 in total

Review 1.  The tension between data sharing and the protection of privacy in genomics research.

Authors:  Jane Kaye
Journal:  Annu Rev Genomics Hum Genet       Date:  2012-03-09       Impact factor: 8.929

2.  Integrated molecular analysis of clear-cell renal cell carcinoma.

Authors:  Yusuke Sato; Tetsuichi Yoshizato; Yuichi Shiraishi; Shigekatsu Maekawa; Yusuke Okuno; Takumi Kamura; Teppei Shimamura; Aiko Sato-Otsubo; Genta Nagae; Hiromichi Suzuki; Yasunobu Nagata; Kenichi Yoshida; Ayana Kon; Yutaka Suzuki; Kenichi Chiba; Hiroko Tanaka; Atsushi Niida; Akihiro Fujimoto; Tatsuhiko Tsunoda; Teppei Morikawa; Daichi Maeda; Haruki Kume; Sumio Sugano; Masashi Fukayama; Hiroyuki Aburatani; Masashi Sanada; Satoru Miyano; Yukio Homma; Seishi Ogawa
Journal:  Nat Genet       Date:  2013-06-24       Impact factor: 38.330

3.  The BioSample Database (BioSD) at the European Bioinformatics Institute.

Authors:  Mikhail Gostev; Adam Faulconbridge; Marco Brandizi; Julio Fernandez-Banet; Ugis Sarkans; Alvis Brazma; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2011-11-16       Impact factor: 16.971

4.  Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.

Authors:  Gosia Trynka; Karen A Hunt; Nicholas A Bockett; Jihane Romanos; Vanisha Mistry; Agata Szperl; Sjoerd F Bakker; Maria Teresa Bardella; Leena Bhaw-Rosun; Gemma Castillejo; Emilio G de la Concha; Rodrigo Coutinho de Almeida; Kerith-Rae M Dias; Cleo C van Diemen; Patrick C A Dubois; Richard H Duerr; Sarah Edkins; Lude Franke; Karin Fransen; Javier Gutierrez; Graham A R Heap; Barbara Hrdlickova; Sarah Hunt; Leticia Plaza Izurieta; Valentina Izzo; Leo A B Joosten; Cordelia Langford; Maria Cristina Mazzilli; Charles A Mein; Vandana Midah; Mitja Mitrovic; Barbara Mora; Marinita Morelli; Sarah Nutland; Concepción Núñez; Suna Onengut-Gumuscu; Kerra Pearce; Mathieu Platteel; Isabel Polanco; Simon Potter; Carmen Ribes-Koninckx; Isis Ricaño-Ponce; Stephen S Rich; Anna Rybak; José Luis Santiago; Sabyasachi Senapati; Ajit Sood; Hania Szajewska; Riccardo Troncone; Jezabel Varadé; Chris Wallace; Victorien M Wolters; Alexandra Zhernakova; B K Thelma; Bozena Cukrowska; Elena Urcelay; Jose Ramon Bilbao; M Luisa Mearin; Donatella Barisani; Jeffrey C Barrett; Vincent Plagnol; Panos Deloukas; Cisca Wijmenga; David A van Heel
Journal:  Nat Genet       Date:  2011-11-06       Impact factor: 38.330

5.  The NHGRI GWAS Catalog, a curated resource of SNP-trait associations.

Authors:  Danielle Welter; Jacqueline MacArthur; Joannella Morales; Tony Burdett; Peggy Hall; Heather Junkins; Alan Klemm; Paul Flicek; Teri Manolio; Lucia Hindorff; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2013-12-06       Impact factor: 16.971

6.  Ensembl 2014.

Authors:  Paul Flicek; M Ridwan Amode; Daniel Barrell; Kathryn Beal; Konstantinos Billis; Simon Brent; Denise Carvalho-Silva; Peter Clapham; Guy Coates; Stephen Fitzgerald; Laurent Gil; Carlos García Girón; Leo Gordon; Thibaut Hourlier; Sarah Hunt; Nathan Johnson; Thomas Juettemann; Andreas K Kähäri; Stephen Keenan; Eugene Kulesha; Fergal J Martin; Thomas Maurel; William M McLaren; Daniel N Murphy; Rishi Nag; Bert Overduin; Miguel Pignatelli; Bethan Pritchard; Emily Pritchard; Harpreet S Riat; Magali Ruffier; Daniel Sheppard; Kieron Taylor; Anja Thormann; Stephen J Trevanion; Alessandro Vullo; Steven P Wilder; Mark Wilson; Amonida Zadissa; Bronwen L Aken; Ewan Birney; Fiona Cunningham; Jennifer Harrow; Javier Herrero; Tim J P Hubbard; Rhoda Kinsella; Matthieu Muffato; Anne Parker; Giulietta Spudich; Andy Yates; Daniel R Zerbino; Stephen M J Searle
Journal:  Nucleic Acids Res       Date:  2013-12-06       Impact factor: 16.971

7.  Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.

Authors: 
Journal:  Nature       Date:  2007-06-07       Impact factor: 49.962

8.  Genome-wide methylation analyses of primary human leukocyte subsets identifies functionally important cell-type-specific hypomethylated regions.

Authors:  Matthias Zilbauer; Tim F Rayner; Christine Clark; Alison J Coffey; Chris J Joyce; Priit Palta; Aarno Palotie; Paul A Lyons; Kenneth G C Smith
Journal:  Blood       Date:  2013-10-24       Impact factor: 22.113

9.  Implementing a successful data-management framework: the UK10K managed access model.

Authors:  Dawn Muddyman; Carol Smee; Heather Griffin; Jane Kaye
Journal:  Genome Med       Date:  2013-11-15       Impact factor: 11.117

10.  Assembly information services in the European Nucleotide Archive.

Authors:  Nima Pakseresht; Blaise Alako; Clara Amid; Ana Cerdeño-Tárraga; Iain Cleland; Richard Gibson; Neil Goodgame; Tamer Gur; Mikyung Jang; Simon Kay; Rasko Leinonen; Weizhong Li; Xin Liu; Rodrigo Lopez; Hamish McWilliam; Arnaud Oisel; Swapna Pallreddy; Sheila Plaister; Rajesh Radhakrishnan; Stephane Rivière; Marc Rossello; Alexander Senf; Nicole Silvester; Dmitriy Smirnov; Silvano Squizzato; Petra ten Hoopen; Ana Luisa Toribio; Daniel Vaughan; Vadim Zalunin; Guy Cochrane
Journal:  Nucleic Acids Res       Date:  2013-11-08       Impact factor: 16.971
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  139 in total

1.  Ensembl variation resources.

Authors:  Yuan Chen; Fiona Cunningham; Daniel Rios; William M McLaren; James Smith; Bethan Pritchard; Giulietta M Spudich; Simon Brent; Eugene Kulesha; Pablo Marin-Garcia; Damian Smedley; Ewan Birney; Paul Flicek
Journal:  BMC Genomics       Date:  2010-05-11       Impact factor: 3.969

2.  Genotype Imputation with Millions of Reference Samples.

Authors:  Brian L Browning; Sharon R Browning
Journal:  Am J Hum Genet       Date:  2016-01-07       Impact factor: 11.025

Review 3.  Human genotype-phenotype databases: aims, challenges and opportunities.

Authors:  Anthony J Brookes; Peter N Robinson
Journal:  Nat Rev Genet       Date:  2015-11-10       Impact factor: 53.242

4.  A Fast and Simple Method for Detecting Identity-by-Descent Segments in Large-Scale Data.

Authors:  Ying Zhou; Sharon R Browning; Brian L Browning
Journal:  Am J Hum Genet       Date:  2020-03-12       Impact factor: 11.025

5.  Interactions between the tumor and the blood systemic response of breast cancer patients.

Authors:  Vanessa Dumeaux; Bjørn Fjukstad; Hans E Fjosne; Jan-Ole Frantzen; Marit Muri Holmen; Enno Rodegerdts; Ellen Schlichting; Anne-Lise Børresen-Dale; Lars Ailo Bongo; Eiliv Lund; Michael Hallett
Journal:  PLoS Comput Biol       Date:  2017-09-28       Impact factor: 4.475

6.  Data Resource Profile: Cardiovascular H3Africa Innovation Resource (CHAIR).

Authors:  Mayowa O Owolabi; Onoja M Akpa; Felix Made; Sally N Adebamowo; Akinlolu Ojo; Dwomoa Adu; Ayesha A Motala; Bongani M Mayosi; Bruce Ovbiagele; Clement Adebamowo; Bamidele Tayo; Charles Rotimi; Rufus Akinyemi; Mulugeta Gebregziabher; Fred Sarfo; Kolawole W Wahab; Rulan S Parekh; Mark E Engel; Chisala Chisala; Emmanuel Peprah; George Mensah; Ken Wiley; Jennifer Troyer; Michèle Ramsay
Journal:  Int J Epidemiol       Date:  2019-04-01       Impact factor: 7.196

Review 7.  The FAIR guiding principles for data stewardship: fair enough?

Authors:  Martin Boeckhout; Gerhard A Zielhuis; Annelien L Bredenoord
Journal:  Eur J Hum Genet       Date:  2018-05-17       Impact factor: 4.246

8.  Novel LRBA Mutation and Possible Germinal Mosaicism in a Slavic Family.

Authors:  Svetlana O Sharapova; Emma Haapaniemi; Inga S Sakovich; Jessica Rojas; Laura Gámez-Díaz; Yuliya E Mareika; Irina E Guryanova; Alexandr A Migas; Taisiya M Mikhaleuskaya; Bodo Grimbacher; Olga V Aleinikova
Journal:  J Clin Immunol       Date:  2018-05-26       Impact factor: 8.317

9.  A One-Penny Imputed Genome from Next-Generation Reference Panels.

Authors:  Brian L Browning; Ying Zhou; Sharon R Browning
Journal:  Am J Hum Genet       Date:  2018-08-09       Impact factor: 11.025

Review 10.  Genetic underpinnings of cerebral edema in acute brain injury: an opportunity for pathway discovery.

Authors:  Elayna Kirsch; Natalia Szejko; Guido J Falcone
Journal:  Neurosci Lett       Date:  2020-05-26       Impact factor: 3.046
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