Literature DB >> 25370865

Rational design of heterodimeric protein using domain swapping for myoglobin.

Ying-Wu Lin1, Satoshi Nagao, Mohan Zhang, Yasuhito Shomura, Yoshiki Higuchi, Shun Hirota.   

Abstract

Protein design is a useful method to create novel artificial proteins. A rational approach to design a heterodimeric protein using domain swapping for horse myoglobin (Mb) was developed. As confirmed by X-ray crystallographic analysis, a heterodimeric Mb with two different active sites was produced efficiently from two surface mutants of Mb, in which the charges of two amino acids involved in the dimer salt bridges were reversed in each mutant individually, with the active site of one mutant modified. This study shows that the method of constructing heterodimeric Mb with domain swapping is useful for designing artificial multiheme proteins.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  X-ray crystallography; dimerization; heme coordination; heme proteins; salt bridges

Mesh:

Substances:

Year:  2014        PMID: 25370865     DOI: 10.1002/anie.201409267

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  11 in total

1.  Amino-acid composition after loop deletion drives domain swapping.

Authors:  Neha Nandwani; Parag Surana; Jayant B Udgaonkar; Ranabir Das; Shachi Gosavi
Journal:  Protein Sci       Date:  2017-08-30       Impact factor: 6.725

2.  Formation and carbon monoxide-dependent dissociation of Allochromatium vinosum cytochrome c' oligomers using domain-swapped dimers.

Authors:  Masaru Yamanaka; Makoto Hoshizumi; Satoshi Nagao; Ryoko Nakayama; Naoki Shibata; Yoshiki Higuchi; Shun Hirota
Journal:  Protein Sci       Date:  2017-02-14       Impact factor: 6.725

Review 3.  Design of artificial metalloproteins/metalloenzymes by tuning noncovalent interactions.

Authors:  Shun Hirota; Ying-Wu Lin
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

Review 4.  Hierarchical design of artificial proteins and complexes toward synthetic structural biology.

Authors:  Ryoichi Arai
Journal:  Biophys Rev       Date:  2017-12-14

5.  Experimental and theoretical study on converting myoglobin into a stable domain-swapped dimer by utilizing a tight hydrogen bond network at the hinge region.

Authors:  Cheng Xie; Hiromitsu Shimoyama; Masaru Yamanaka; Satoshi Nagao; Hirofumi Komori; Naoki Shibata; Yoshiki Higuchi; Yasuteru Shigeta; Shun Hirota
Journal:  RSC Adv       Date:  2021-11-23       Impact factor: 4.036

6.  Rational Design of Dual Active Sites in a Single Protein Scaffold: A Case Study of Heme Protein in Myoglobin.

Authors:  Xiao-Gang Shu; Ji-Hu Su; Ke-Jie Du; Yong You; Shu-Qin Gao; Ge-Bo Wen; Xiangshi Tan; Ying-Wu Lin
Journal:  ChemistryOpen       Date:  2016-03-08       Impact factor: 2.911

7.  Domain-swapped cytochrome cb562 dimer and its nanocage encapsulating a Zn-SO4 cluster in the internal cavity.

Authors:  Takaaki Miyamoto; Mai Kuribayashi; Satoshi Nagao; Yasuhito Shomura; Yoshiki Higuchi; Shun Hirota
Journal:  Chem Sci       Date:  2015-09-22       Impact factor: 9.825

8.  The enigma of the near-symmetry of proteins: Domain swapping.

Authors:  Maayan Bonjack-Shterengartz; David Avnir
Journal:  PLoS One       Date:  2017-07-14       Impact factor: 3.240

9.  A five-residue motif for the design of domain swapping in proteins.

Authors:  Neha Nandwani; Parag Surana; Hitendra Negi; Nahren M Mascarenhas; Jayant B Udgaonkar; Ranabir Das; Shachi Gosavi
Journal:  Nat Commun       Date:  2019-01-28       Impact factor: 14.919

10.  Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells.

Authors:  Yugo Hayashi; Masaru Yamanaka; Satoshi Nagao; Hirofumi Komori; Yoshiki Higuchi; Shun Hirota
Journal:  Sci Rep       Date:  2016-02-03       Impact factor: 4.379

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