Literature DB >> 29202216

Type II-C CRISPR-Cas9 Biology, Mechanism, and Application.

Aamir Mir1, Alireza Edraki1, Jooyoung Lee1, Erik J Sontheimer1.   

Abstract

Genome editing technologies have been revolutionized by the discovery of prokaryotic RNA-guided defense system called CRISPR-Cas. Cas9, a single effector protein found in type II CRISPR systems, has been at the heart of this genome editing revolution. Nearly half of the Cas9s discovered so far belong to the type II-C subtype but have not been explored extensively. Type II-C CRISPR-Cas systems are the simplest of the type II systems, employing only three Cas proteins. Cas9s are central players in type II-C systems since they function in multiple steps of the CRISPR pathway, including adaptation and interference. Type II-C CRISPR systems are found in bacteria and archaea from very diverse environments, resulting in Cas9s with unique and potentially useful properties. Certain type II-C Cas9s possess unusually long PAMs, function in unique conditions (e.g., elevated temperature), and tend to be smaller in size. Here, we review the biology, mechanism, and applications of the type II-C CRISPR systems with particular emphasis on their Cas9s.

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Year:  2017        PMID: 29202216      PMCID: PMC5815938          DOI: 10.1021/acschembio.7b00855

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  71 in total

1.  Crystal Structure of Staphylococcus aureus Cas9.

Authors:  Hiroshi Nishimasu; Le Cong; Winston X Yan; F Ann Ran; Bernd Zetsche; Yinqing Li; Arisa Kurabayashi; Ryuichiro Ishitani; Feng Zhang; Osamu Nureki
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

Review 2.  The CRISPR-Cas9 system in Neisseria spp.

Authors:  Yan Zhang
Journal:  Pathog Dis       Date:  2017-06-01       Impact factor: 3.166

3.  Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease.

Authors:  Seung Woo Cho; Sojung Kim; Jong Min Kim; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

Review 4.  Adaptation in CRISPR-Cas Systems.

Authors:  Samuel H Sternberg; Hagen Richter; Emmanuelle Charpentier; Udi Qimron
Journal:  Mol Cell       Date:  2016-03-03       Impact factor: 17.970

5.  Structure and Engineering of Francisella novicida Cas9.

Authors:  Hisato Hirano; Jonathan S Gootenberg; Takuro Horii; Omar O Abudayyeh; Mika Kimura; Patrick D Hsu; Takanori Nakane; Ryuichiro Ishitani; Izuho Hatada; Feng Zhang; Hiroshi Nishimasu; Osamu Nureki
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

6.  Diversity and evolution of class 2 CRISPR-Cas systems.

Authors:  Sergey Shmakov; Aaron Smargon; David Scott; David Cox; Neena Pyzocha; Winston Yan; Omar O Abudayyeh; Jonathan S Gootenberg; Kira S Makarova; Yuri I Wolf; Konstantin Severinov; Feng Zhang; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2017-01-23       Impact factor: 60.633

Review 7.  An updated evolutionary classification of CRISPR-Cas systems.

Authors:  Kira S Makarova; Yuri I Wolf; Omer S Alkhnbashi; Fabrizio Costa; Shiraz A Shah; Sita J Saunders; Rodolphe Barrangou; Stan J J Brouns; Emmanuelle Charpentier; Daniel H Haft; Philippe Horvath; Sylvain Moineau; Francisco J M Mojica; Rebecca M Terns; Michael P Terns; Malcolm F White; Alexander F Yakunin; Roger A Garrett; John van der Oost; Rolf Backofen; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2015-09-28       Impact factor: 60.633

8.  CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.

Authors:  Elitza Deltcheva; Krzysztof Chylinski; Cynthia M Sharma; Karine Gonzales; Yanjie Chao; Zaid A Pirzada; Maria R Eckert; Jörg Vogel; Emmanuelle Charpentier
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

Review 9.  CRISPR-Cas orthologues and variants: optimizing the repertoire, specificity and delivery of genome engineering tools.

Authors:  Alberto Cebrian-Serrano; Benjamin Davies
Journal:  Mamm Genome       Date:  2017-06-20       Impact factor: 2.957

10.  RNA-programmed genome editing in human cells.

Authors:  Martin Jinek; Alexandra East; Aaron Cheng; Steven Lin; Enbo Ma; Jennifer Doudna
Journal:  Elife       Date:  2013-01-29       Impact factor: 8.140

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  27 in total

1.  Directed evolution studies of a thermophilic Type II-C Cas9.

Authors:  Travis H Hand; Anuska Das; Hong Li
Journal:  Methods Enzymol       Date:  2018-12-28       Impact factor: 1.600

2.  High-throughput continuous evolution of compact Cas9 variants targeting single-nucleotide-pyrimidine PAMs.

Authors:  Tony P Huang; Zachary J Heins; Shannon M Miller; Brandon G Wong; Pallavi A Balivada; Tina Wang; Ahmad S Khalil; David R Liu
Journal:  Nat Biotechnol       Date:  2022-09-08       Impact factor: 68.164

3.  Phosphate Lock Residues of Acidothermus cellulolyticus Cas9 Are Critical to Its Substrate Specificity.

Authors:  Travis H Hand; Anuska Das; Mitchell O Roth; Chardasia L Smith; Uriel L Jean-Baptiste; Hong Li
Journal:  ACS Synth Biol       Date:  2018-12-03       Impact factor: 5.110

4.  Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States.

Authors:  Wei Sun; Jing Yang; Zhi Cheng; Nadia Amrani; Chao Liu; Kangkang Wang; Raed Ibraheim; Alireza Edraki; Xue Huang; Min Wang; Jiuyu Wang; Liang Liu; Gang Sheng; Yanhua Yang; Jizhong Lou; Erik J Sontheimer; Yanli Wang
Journal:  Mol Cell       Date:  2019-10-24       Impact factor: 17.970

Review 5.  Type II anti-CRISPR proteins as a new tool for synthetic biology.

Authors:  Yadan Zhang; Mario Andrea Marchisio
Journal:  RNA Biol       Date:  2020-10-13       Impact factor: 4.652

Review 6.  Genome-editing approaches and applications: a brief review on CRISPR technology and its role in cancer.

Authors:  Narmadhaa Siva; Sonal Gupta; Ayam Gupta; Jayendra Nath Shukla; Babita Malik; Nidhi Shukla
Journal:  3 Biotech       Date:  2021-02-26       Impact factor: 2.406

7.  Structural and dynamic insights into the HNH nuclease of divergent Cas9 species.

Authors:  Helen B Belato; Alexandra M D'Ordine; Lukasz Nierzwicki; Pablo R Arantes; Gerwald Jogl; Giulia Palermo; George P Lisi
Journal:  J Struct Biol       Date:  2021-12-03       Impact factor: 2.867

8.  All-in-one adeno-associated virus delivery and genome editing by Neisseria meningitidis Cas9 in vivo.

Authors:  Raed Ibraheim; Chun-Qing Song; Aamir Mir; Nadia Amrani; Wen Xue; Erik J Sontheimer
Journal:  Genome Biol       Date:  2018-09-19       Impact factor: 13.583

9.  Distinct Genomic Features Characterize Two Clades of Corynebacterium diphtheriae: Proposal of Corynebacterium diphtheriae Subsp. diphtheriae Subsp. nov. and Corynebacterium diphtheriae Subsp. lausannense Subsp. nov.

Authors:  Florian Tagini; Trestan Pillonel; Antony Croxatto; Claire Bertelli; Angela Koutsokera; Alban Lovis; Gilbert Greub
Journal:  Front Microbiol       Date:  2018-08-17       Impact factor: 5.640

10.  Potent Cas9 Inhibition in Bacterial and Human Cells by AcrIIC4 and AcrIIC5 Anti-CRISPR Proteins.

Authors:  Jooyoung Lee; Aamir Mir; Alireza Edraki; Bianca Garcia; Nadia Amrani; Hannah E Lou; Ildar Gainetdinov; April Pawluk; Raed Ibraheim; Xin D Gao; Pengpeng Liu; Alan R Davidson; Karen L Maxwell; Erik J Sontheimer
Journal:  mBio       Date:  2018-12-04       Impact factor: 7.867

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