Literature DB >> 26317473

Crystal Structure of Staphylococcus aureus Cas9.

Hiroshi Nishimasu1, Le Cong2, Winston X Yan3, F Ann Ran4, Bernd Zetsche2, Yinqing Li2, Arisa Kurabayashi5, Ryuichiro Ishitani5, Feng Zhang6, Osamu Nureki7.   

Abstract

The RNA-guided DNA endonuclease Cas9 cleaves double-stranded DNA targets with a protospacer adjacent motif (PAM) and complementarity to the guide RNA. Recently, we harnessed Staphylococcus aureus Cas9 (SaCas9), which is significantly smaller than Streptococcus pyogenes Cas9 (SpCas9), to facilitate efficient in vivo genome editing. Here, we report the crystal structures of SaCas9 in complex with a single guide RNA (sgRNA) and its double-stranded DNA targets, containing the 5'-TTGAAT-3' PAM and the 5'-TTGGGT-3' PAM, at 2.6 and 2.7 Å resolutions, respectively. The structures revealed the mechanism of the relaxed recognition of the 5'-NNGRRT-3' PAM by SaCas9. A structural comparison of SaCas9 with SpCas9 highlighted both structural conservation and divergence, explaining their distinct PAM specificities and orthologous sgRNA recognition. Finally, we applied the structural information about this minimal Cas9 to rationally design compact transcriptional activators and inducible nucleases, to further expand the CRISPR-Cas9 genome editing toolbox.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26317473      PMCID: PMC4670267          DOI: 10.1016/j.cell.2015.08.007

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  34 in total

1.  A split-Cas9 architecture for inducible genome editing and transcription modulation.

Authors:  Bernd Zetsche; Sara E Volz; Feng Zhang
Journal:  Nat Biotechnol       Date:  2015-02       Impact factor: 54.908

2.  Rational design of a split-Cas9 enzyme complex.

Authors:  Addison V Wright; Samuel H Sternberg; David W Taylor; Brett T Staahl; Jorge A Bardales; Jack E Kornfeld; Jennifer A Doudna
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-23       Impact factor: 11.205

3.  Engineering the ABA plant stress pathway for regulation of induced proximity.

Authors:  Fu-Sen Liang; Wen Qi Ho; Gerald R Crabtree
Journal:  Sci Signal       Date:  2011-03-15       Impact factor: 8.192

4.  Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin.

Authors:  Alexander Bolotin; Benoit Quinquis; Alexei Sorokin; S Dusko Ehrlich
Journal:  Microbiology       Date:  2005-08       Impact factor: 2.777

5.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

6.  CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.

Authors:  Elitza Deltcheva; Krzysztof Chylinski; Cynthia M Sharma; Karine Gonzales; Yanjie Chao; Zaid A Pirzada; Maria R Eckert; Jörg Vogel; Emmanuelle Charpentier
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

7.  In vivo genome editing using Staphylococcus aureus Cas9.

Authors:  F Ann Ran; Le Cong; Winston X Yan; David A Scott; Jonathan S Gootenberg; Andrea J Kriz; Bernd Zetsche; Ophir Shalem; Xuebing Wu; Kira S Makarova; Eugene V Koonin; Phillip A Sharp; Feng Zhang
Journal:  Nature       Date:  2015-04-01       Impact factor: 49.962

8.  A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action.

Authors:  Kira S Makarova; Nick V Grishin; Svetlana A Shabalina; Yuri I Wolf; Eugene V Koonin
Journal:  Biol Direct       Date:  2006-03-16       Impact factor: 4.540

9.  RNA-guided editing of bacterial genomes using CRISPR-Cas systems.

Authors:  Wenyan Jiang; David Bikard; David Cox; Feng Zhang; Luciano A Marraffini
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

10.  Optical control of mammalian endogenous transcription and epigenetic states.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro Trevino; Patrick D Hsu; Matthias Heidenreich; Le Cong; Randall J Platt; David A Scott; George M Church; Feng Zhang
Journal:  Nature       Date:  2013-08-23       Impact factor: 49.962

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  153 in total

1.  Re-engineered RNA-Guided FokI-Nucleases for Improved Genome Editing in Human Cells.

Authors:  Steven Havlicek; Yang Shen; Yunus Alpagu; Michaela B Bruntraeger; Nurdiana B M Zufir; Zhi Yi Phuah; Zhiyan Fu; Norris R Dunn; Lawrence W Stanton
Journal:  Mol Ther       Date:  2017-02-01       Impact factor: 11.454

2.  Breaking-Cas-interactive design of guide RNAs for CRISPR-Cas experiments for ENSEMBL genomes.

Authors:  Juan C Oliveros; Mònica Franch; Daniel Tabas-Madrid; David San-León; Lluis Montoliu; Pilar Cubas; Florencio Pazos
Journal:  Nucleic Acids Res       Date:  2016-05-10       Impact factor: 16.971

Review 3.  Approach for in vivo delivery of CRISPR/Cas system: a recent update and future prospect.

Authors:  Yu-Fan Chuang; Andrew J Phipps; Fan-Li Lin; Valerie Hecht; Alex W Hewitt; Peng-Yuan Wang; Guei-Sheung Liu
Journal:  Cell Mol Life Sci       Date:  2021-01-03       Impact factor: 9.261

Review 4.  Application of CRISPR/Cas System in the Metabolic Engineering of Small Molecules.

Authors:  Rajveer Singh; Shivani Chandel; Arijit Ghosh; Dhritiman Dey; Rudra Chakravarti; Syamal Roy; V Ravichandiran; Dipanjan Ghosh
Journal:  Mol Biotechnol       Date:  2021-03-27       Impact factor: 2.695

5.  Structural basis of stringent PAM recognition by CRISPR-C2c1 in complex with sgRNA.

Authors:  Dan Wu; Xiaoyu Guan; Yuwei Zhu; Kuan Ren; Zhiwei Huang
Journal:  Cell Res       Date:  2017-04-04       Impact factor: 25.617

6.  Mechanism of duplex DNA destabilization by RNA-guided Cas9 nuclease during target interrogation.

Authors:  Vladimir Mekler; Leonid Minakhin; Konstantin Severinov
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-08       Impact factor: 11.205

7.  CRISPR-Cas9 Mediated DNA Unwinding Detected Using Site-Directed Spin Labeling.

Authors:  Narin S Tangprasertchai; Rosa Di Felice; Xiaojun Zhang; Ian M Slaymaker; Carolina Vazquez Reyes; Wei Jiang; Remo Rohs; Peter Z Qin
Journal:  ACS Chem Biol       Date:  2017-05-03       Impact factor: 5.100

8.  Exploring the Catalytic Mechanism of Cas9 Using Information Inferred from Endonuclease VII.

Authors:  Hanwool Yoon; Li Na Zhao; Arieh Warshel
Journal:  ACS Catal       Date:  2018-12-28       Impact factor: 13.084

9.  Quantification of the affinities of CRISPR-Cas9 nucleases for cognate protospacer adjacent motif (PAM) sequences.

Authors:  Vladimir Mekler; Konstantin Kuznedelov; Konstantin Severinov
Journal:  J Biol Chem       Date:  2020-04-01       Impact factor: 5.157

10.  Phosphate Lock Residues of Acidothermus cellulolyticus Cas9 Are Critical to Its Substrate Specificity.

Authors:  Travis H Hand; Anuska Das; Mitchell O Roth; Chardasia L Smith; Uriel L Jean-Baptiste; Hong Li
Journal:  ACS Synth Biol       Date:  2018-12-03       Impact factor: 5.110

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