Literature DB >> 18773302

Mean time to resolution of gene duplication.

Cheng Xue1, Yunxin Fu.   

Abstract

The mean time to resolution of gene duplication (T(r)) is studied in this paper under the double null recessive (DNR) and haplo-insufficient (HI) models within the same analytical and simulation framework. We show that when population size is not too small (more precisely Nmu > 0.1), T(r) for unlinked duplication is usually larger than that for linked and T(r) for unlinked duplication under the HI model might be greatly prolonged, which were consistent with previous observations. Furthermore, by analytical approach we here indicate the primary underlying mechanism is that the frequency of the original (or wild-type) chromosomal haplotype of the linked duplication decreases nearly exponential to zero with time while that of the unlinked decreases quickly to an quasi-equilibrium; and this phenomenon is particularly profound under the HI model, because the quasi-equilibrium frequency of the original chromosomal haplotype (x(0)) under the HI model is higher than that under the DNR model. These results suggest that recombination and HI model might jointly contribute to the marked prolongation of T(r) even in a modest population. The prolonged T(r) and higher quasi-equilibrium frequency of the original allele at both duplicated loci might have offered more opportunities for the emergence of novel genes.

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Year:  2008        PMID: 18773302     DOI: 10.1007/s10709-008-9319-x

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  14 in total

Review 1.  Preservation of duplicate genes by complementary, degenerative mutations.

Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

2.  The early stages of duplicate gene evolution.

Authors:  Richard C Moore; Michael D Purugganan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-11       Impact factor: 11.205

3.  Population-genetic models of the fates of duplicate genes.

Authors:  Bruce Walsh
Journal:  Genetica       Date:  2003-07       Impact factor: 1.082

Review 4.  A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications.

Authors:  Fyodor A Kondrashov; Eugene V Koonin
Journal:  Trends Genet       Date:  2004-07       Impact factor: 11.639

5.  The altered evolutionary trajectories of gene duplicates.

Authors:  Michael Lynch; Vaishali Katju
Journal:  Trends Genet       Date:  2004-11       Impact factor: 11.639

6.  Molecular evidence for an ancient duplication of the entire yeast genome.

Authors:  K H Wolfe; D C Shields
Journal:  Nature       Date:  1997-06-12       Impact factor: 49.962

7.  Fixation of a deleterious allele at one of two "duplicate" loci by mutation pressure and random drift.

Authors:  M Kimura; J L King
Journal:  Proc Natl Acad Sci U S A       Date:  1979-06       Impact factor: 11.205

8.  Loss of duplicate gene expression after polyploidisation.

Authors:  S D Ferris; G S Whitt
Journal:  Nature       Date:  1977-01-20       Impact factor: 49.962

9.  Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes.

Authors:  W H Li
Journal:  Genetics       Date:  1980-05       Impact factor: 4.562

10.  Polymorphism and loss of duplicate gene expression: a theoretical study with application of tetraploid fish.

Authors:  N Takahata; T Maruyama
Journal:  Proc Natl Acad Sci U S A       Date:  1979-09       Impact factor: 11.205

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  2 in total

1.  Genome changes after gene duplication: haploidy vs. diploidy.

Authors:  Cheng Xue; Ren Huang; Taylor J Maxwell; Yun-Xin Fu
Journal:  Genetics       Date:  2010-06-15       Impact factor: 4.562

2.  Recombination facilitates neofunctionalization of duplicate genes via originalization.

Authors:  Cheng Xue; Ren Huang; Shu-Qun Liu; Yun-Xin Fu
Journal:  BMC Genet       Date:  2010-06-09       Impact factor: 2.797

  2 in total

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