Literature DB >> 29177252

A volumetric conformal mapping approach for clustering white matter fibers in the brain.

Vikash Gupta1, Gautam Prasad2, Paul Thompson1.   

Abstract

The human brain may be considered as a genus-0 shape, topologically equivalent to a sphere. Various methods have been used in the past to transform the brain surface to that of a sphere using harmonic energy minimization methods used for cortical surface matching. However, very few methods have studied volumetric parameterization of the brain using a spherical embedding. Volumetric parameterization is typically used for complicated geometric problems like shape matching, morphing and isogeometric analysis. Using conformal mapping techniques, we can establish a bijective mapping between the brain and the topologically equivalent sphere. Our hypothesis is that shape analysis problems are simplified when the shape is defined in an intrinsic coordinate system. Our goal is to establish such a coordinate system for the brain. The efficacy of the method is demonstrated with a white matter clustering problem. Initial results show promise for future investigation in these parameterization technique and its application to other problems related to computational anatomy like registration and segmentation.

Entities:  

Keywords:  Conformal mapping; Spectral clustering; Volumetric Parameterization; White matter fiber clustering

Year:  2016        PMID: 29177252      PMCID: PMC5699220          DOI: 10.1007/978-3-319-51237-2_1

Source DB:  PubMed          Journal:  Spectr Shape Anal Med Imaging (2016)


  14 in total

1.  Probabilistic Monte Carlo based mapping of cerebral connections utilising whole-brain crossing fibre information.

Authors:  Geoff J M Parker; Daniel C Alexander
Journal:  Inf Process Med Imaging       Date:  2003-07

2.  Robust clustering of massive tractography datasets.

Authors:  P Guevara; C Poupon; D Rivière; Y Cointepas; M Descoteaux; B Thirion; J-F Mangin
Journal:  Neuroimage       Date:  2010-10-18       Impact factor: 6.556

3.  Conformal mapping via metric optimization with application for cortical label fusion.

Authors:  Yonggang Shi; Rongjie Lai; Arthur W Toga
Journal:  Inf Process Med Imaging       Date:  2013

4.  A method for clustering white matter fiber tracts.

Authors:  L J O'Donnell; M Kubicki; M E Shenton; M H Dreusicke; W E L Grimson; C F Westin
Journal:  AJNR Am J Neuroradiol       Date:  2006-05       Impact factor: 3.825

5.  Brain surface conformal parameterization with algebraic functions.

Authors:  Yalin Wang; Xianfeng Gu; Tony F Chan; Paul M Thompson; Shing-Tung Yau
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

6.  Brain surface conformal parameterization with the Ricci flow.

Authors:  Yalin Wang; Jie Shi; Xiaotian Yin; Xianfeng Gu; Tony F Chan; Shing-Tung Yau; Arthur W Toga; Paul M Thompson
Journal:  IEEE Trans Med Imaging       Date:  2011-09-15       Impact factor: 10.048

7.  Automatic clustering of white matter fibers in brain diffusion MRI with an application to genetics.

Authors:  Yan Jin; Yonggang Shi; Liang Zhan; Boris A Gutman; Greig I de Zubicaray; Katie L McMahon; Margaret J Wright; Arthur W Toga; Paul M Thompson
Journal:  Neuroimage       Date:  2014-05-09       Impact factor: 6.556

8.  Atlas-guided tract reconstruction for automated and comprehensive examination of the white matter anatomy.

Authors:  Yajing Zhang; Jiangyang Zhang; Kenichi Oishi; Andreia V Faria; Hangyi Jiang; Xin Li; Kazi Akhter; Pedro Rosa-Neto; G Bruce Pike; Alan Evans; Arthur W Toga; Roger Woods; John C Mazziotta; Michael I Miller; Peter C M van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2010-05-24       Impact factor: 6.556

9.  Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: application to normal elderly and Alzheimer's disease participants.

Authors:  Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li; Kazi Akhter; Jiangyang Zhang; John T Hsu; Michael I Miller; Peter C M van Zijl; Marilyn Albert; Constantine G Lyketsos; Roger Woods; Arthur W Toga; G Bruce Pike; Pedro Rosa-Neto; Alan Evans; John Mazziotta; Susumu Mori
Journal:  Neuroimage       Date:  2009-06       Impact factor: 6.556

10.  Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.

Authors:  B B Avants; C L Epstein; M Grossman; J C Gee
Journal:  Med Image Anal       Date:  2007-06-23       Impact factor: 8.545

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