Literature DB >> 2915976

Alpha-helix and mixed 3(10)/alpha-helix in cocrystallized conformers of Boc-Aib-Val-Aib-Aib-Val-Val-Val-Aib-Val-Aib-OMe.

I L Karle1, J L Flippen-Anderson, K Uma, H Balaram, P Balaram.   

Abstract

Two molecules of Boc-Aib-Val-Aib-Aib-Val-Val-Val-Aib-Val-Aib-OMe (where Boc is t-butoxycarbonyl and Aib is alpha-aminoisobutyryl) cocrystallize in a triclinic cell with different helical conformations. One molecule is completely alpha-helical with seven 5----1 intramolecular hydrogen bonds. It forms three head-to-tail NH...O = C hydrogen bonds to other molecules of the same conformation. The second molecule has a mixed 3(10)/alpha-helix conformation with three 4----1 hydrogen bonds and four 5----1 hydrogen bonds; furthermore, there is a helix reversal at both termini. The second molecule forms only two head-to-tail hydrogen bonds with molecules of the same type, and the N(3)H group does not participate in any hydrogen bonding. The two different types of helices occur in alternate sheets in the crystal, where each sheet is composed of adjacent rods of helices formed by head-to-tail hydrogen bonding. Within each sheet, containing helices of only one type of conformation, the helices aggregate in a parallel mode. Between the sheets of different helices, the aggregation is antiparallel. The peptide, with formula C51H92N10O13, crystallizes in space group P1 with Z = 2 and cell parameters a = 10.047 +/- 0.002 A, b = 16.684 +/- 0.003 A, c = 19.198 +/- 0.004 A, alpha = 80.30 degrees +/- 0.01 degrees, beta = 85.74 degrees +/- 0.01 degrees, and gamma = 83.03 degrees +/- 0.01 degrees; overall agreement factor R = 6.7% for 6053 data ([F0] greater than 3 sigma) and 0.96-A resolution.

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Year:  1989        PMID: 2915976      PMCID: PMC286557          DOI: 10.1073/pnas.86.3.765

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  4 in total

1.  Monoclinic polymorph of Boc-Trp-Ile-Ala-Aib-Ile-Val-Aib-Leu-Aib-Pro-OMe(anhydrous). Parallel packing of 3(10)-/alpha-helices and a transition of helix type.

Authors:  I L Karle; J L Flippen-Anderson; M Sukumar; P Balaram
Journal:  Int J Pept Protein Res       Date:  1988-06

Review 2.  The anatomy and taxonomy of protein structure.

Authors:  J S Richardson
Journal:  Adv Protein Chem       Date:  1981

Review 3.  The stereochemistry of peptides containing alpha-aminoisobutyric acid.

Authors:  B V Prasad; P Balaram
Journal:  CRC Crit Rev Biochem       Date:  1984

4.  Parallel packing of alpha-helices in crystals of the zervamicin IIA analog Boc-Trp-Ile-Ala-Aib-Ile-Val-Aib-Leu-Aib-Pro-OMe.2H2O.

Authors:  I L Karle; M Sukumar; P Balaram
Journal:  Proc Natl Acad Sci U S A       Date:  1986-12       Impact factor: 11.205

  4 in total
  8 in total

1.  Factors governing helical preference of peptides containing multiple alpha,alpha-dialkyl amino acids.

Authors:  G R Marshall; E E Hodgkin; D A Langs; G D Smith; J Zabrocki; M T Leplawy
Journal:  Proc Natl Acad Sci U S A       Date:  1990-01       Impact factor: 11.205

2.  Conformational preferences of alpha-substituted proline analogues.

Authors:  Alejandra Flores-Ortega; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Carlos Alemán; Jordi Casanovas
Journal:  J Org Chem       Date:  2008-03-20       Impact factor: 4.354

3.  Facile transition between 3(10)- and alpha-helix: structures of 8-, 9-, and 10-residue peptides containing the -(Leu-Aib-Ala)2-Phe-Aib- fragment.

Authors:  I L Karle; J L Flippen-Anderson; R Gurunath; P Balaram
Journal:  Protein Sci       Date:  1994-09       Impact factor: 6.725

4.  A hydrogen bond surrogate approach for stabilization of short peptide sequences in alpha-helical conformation.

Authors:  Anupam Patgiri; Andrea L Jochim; Paramjit S Arora
Journal:  Acc Chem Res       Date:  2008-07-17       Impact factor: 22.384

5.  Intrinsic conformational preferences of C(alpha,alpha)-dibenzylglycine.

Authors:  Jordi Casanovas; Ruth Nussinov; Carlos Alemán
Journal:  J Org Chem       Date:  2008-05-09       Impact factor: 4.354

6.  An optimal hydrogen-bond surrogate for α-helices.

Authors:  Stephen T Joy; Paramjit S Arora
Journal:  Chem Commun (Camb)       Date:  2016-04-28       Impact factor: 6.222

7.  Alpha,beta hybrid peptides: a polypeptide helix with a central segment containing two consecutive beta-amino acid residues.

Authors:  Rituparna S Roy; Isabella L Karle; S Raghothama; P Balaram
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-16       Impact factor: 11.205

8.  High-resolution crystal structures of protein helices reconciled with three-centered hydrogen bonds and multipole electrostatics.

Authors:  Daniel J Kuster; Chengyu Liu; Zheng Fang; Jay W Ponder; Garland R Marshall
Journal:  PLoS One       Date:  2015-04-20       Impact factor: 3.240

  8 in total

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