Literature DB >> 6389004

The stereochemistry of peptides containing alpha-aminoisobutyric acid.

B V Prasad, P Balaram.   

Abstract

The introduction of alpha-aminoisobutyric acid (Aib) into peptides dramatically limits the range of accessible backbone conformations. The presence of two geminal methyl groups at C alpha sterically compels Aib residues to largely favor structures in the right- or left-handed 3(10)/alpha-helical regions (phi approximately +/- 60 +/- 20 degrees, psi approximately +/- 30 +/- 20 degrees) of the peptide conformational map. Aib residues occur extensively in microbial peptides which form transmembrane channels. This observation has stimulated considerable interest in the stereochemistry of Aib peptides. This review summarizes theoretical studies on the conformations of Aib residues and examines the available data on solid-state structures, derived from single crystal X-ray diffraction studies. Crystal structures of over three dozen Aib-containing peptides, ranging in length from 2 to 11 residues, have been reported so far which exemplify various types of beta-turns, consecutive beta-turns, and helical structures. Examples of nonhydrogen bonded and cyclic structures are also described. The crystallographic results compare well with structural studies in solution, establishing that Aib peptides can provide rigid structural models for the development of spectroscopic methods of peptide conformational analysis.

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Year:  1984        PMID: 6389004     DOI: 10.3109/10409238409108718

Source DB:  PubMed          Journal:  CRC Crit Rev Biochem        ISSN: 0045-6411


  23 in total

1.  Parallel zippers formed by alpha-helical peptide columns in crystals of Boc-Aib-Glu(OBzl)-Leu-Aib-Ala-Leu-Aib-Ala-Lys(Z)-Aib-OMe.

Authors:  I L Karle; J L Flippen-Anderson; K Uma; P Balaram
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

2.  Analysis of peptaibol sequence composition: implications for in vivo synthesis and channel formation.

Authors:  L Whitmore; B A Wallace
Journal:  Eur Biophys J       Date:  2003-10-08       Impact factor: 1.733

3.  Development of small molecules designed to modulate protein-protein interactions.

Authors:  Ye Che; Bernard R Brooks; Garland R Marshall
Journal:  J Comput Aided Mol Des       Date:  2006-04-19       Impact factor: 3.686

Review 4.  Expanding the polypeptide backbone: hydrogen-bonded conformations in hybrid polypeptides containing the higher homologues of alpha-amino acids.

Authors:  Sunanda Chatterjee; Rituparna Sinha Roy; P Balaram
Journal:  J R Soc Interface       Date:  2007-08-22       Impact factor: 4.118

5.  Aqueous channels within apolar peptide aggregates: solvated helix of the alpha-aminoisobutyric acid (Aib)-containing peptide Boc-(Aib-Ala-Leu)3-Aib-OMe.2H2O.CH3OH in crystals.

Authors:  I L Karle; J Flippen-Anderson; K Uma; P Balaram
Journal:  Proc Natl Acad Sci U S A       Date:  1988-01       Impact factor: 11.205

6.  Alpha-helix and mixed 3(10)/alpha-helix in cocrystallized conformers of Boc-Aib-Val-Aib-Aib-Val-Val-Val-Aib-Val-Aib-OMe.

Authors:  I L Karle; J L Flippen-Anderson; K Uma; H Balaram; P Balaram
Journal:  Proc Natl Acad Sci U S A       Date:  1989-02       Impact factor: 11.205

7.  Designing amino acids to determine the local conformations of peptides.

Authors:  A W Burgess
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-29       Impact factor: 11.205

8.  Factors governing helical preference of peptides containing multiple alpha,alpha-dialkyl amino acids.

Authors:  G R Marshall; E E Hodgkin; D A Langs; G D Smith; J Zabrocki; M T Leplawy
Journal:  Proc Natl Acad Sci U S A       Date:  1990-01       Impact factor: 11.205

9.  Inhibition of caspase-9 by stabilized peptides targeting the dimerization interface.

Authors:  Kristen L Huber; Sumana Ghosh; Jeanne A Hardy
Journal:  Biopolymers       Date:  2012       Impact factor: 2.505

10.  Facile transition between 3(10)- and alpha-helix: structures of 8-, 9-, and 10-residue peptides containing the -(Leu-Aib-Ala)2-Phe-Aib- fragment.

Authors:  I L Karle; J L Flippen-Anderson; R Gurunath; P Balaram
Journal:  Protein Sci       Date:  1994-09       Impact factor: 6.725

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