Literature DB >> 18351745

Conformational preferences of alpha-substituted proline analogues.

Alejandra Flores-Ortega1, Ana I Jiménez, Carlos Cativiela, Ruth Nussinov, Carlos Alemán, Jordi Casanovas.   

Abstract

DFT calculations at the B3LYP/6-31+G(d,p) level have been used to investigate how the replacement of the alpha hydrogen by a more sterically demanding group affects the conformational preferences of proline. Specifically, the N-acetyl-N'-methylamide derivatives of L-proline, L-alpha-methylproline, and L-alpha-phenylproline have been calculated, with both the cis/trans isomerism of the peptide bonds and the puckering of the pyrrolidine ring being considered. The effects of solvation have been evaluated by using a Self-Consistent Reaction Field model. As expected, tetrasubstitution at the alpha carbon destabilizes the conformers with one or more peptide bonds arranged in cis. The lowest energy minimum has been found to be identical for the three compounds investigated, but important differences are observed regarding other energetically accessible backbone conformations. The results obtained provide evidence that the distinct steric requirements of the substituent at C (alpha) may play a significant role in modulating the conformational preferences of proline.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18351745      PMCID: PMC2679371          DOI: 10.1021/jo702710x

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  40 in total

1.  Conformational analysis of homochiral and heterochiral diprolines as beta-turn-forming peptidomimetics: unsubstituted and substituted models.

Authors:  P W Baures; W H Ojala; W B Gleason; R L Johnson
Journal:  J Pept Res       Date:  1997-07

2.  Molecular structure of proline.

Authors:  Wesley D Allen; Eszter Czinki; Attila G Császár
Journal:  Chemistry       Date:  2004-09-20       Impact factor: 5.236

3.  Occurrence and role of cis peptide bonds in protein structures.

Authors:  D E Stewart; A Sarkar; J E Wampler
Journal:  J Mol Biol       Date:  1990-07-05       Impact factor: 5.469

4.  Variations in the turn-forming characteristics of N-acyl proline units.

Authors:  G B Liang; C J Rito; S H Gellman
Journal:  Biopolymers       Date:  1992-03       Impact factor: 2.505

5.  Alpha/3(10)-helix transitions in alpha-methylalanine homopeptides: conformational transition pathway and potential of mean force.

Authors:  S E Huston; G R Marshall
Journal:  Biopolymers       Date:  1994-01       Impact factor: 2.505

6.  Synthesis, conformational properties, and antibody recognition of peptides containing beta-turn mimetics based on alpha-alkylproline derivatives.

Authors:  M G Hinds; J H Welsh; D M Brennand; J Fisher; M J Glennie; N G Richards; D L Turner; J A Robinson
Journal:  J Med Chem       Date:  1991-06       Impact factor: 7.446

7.  Conformational preferences and cis-trans isomerization of azaproline residue.

Authors:  Young Kee Kang; Byung Jin Byun
Journal:  J Phys Chem B       Date:  2007-04-18       Impact factor: 2.991

8.  Membrane translocation mechanism of the antimicrobial peptide buforin 2.

Authors:  Satoe Kobayashi; Akinori Chikushi; Shiho Tougu; Yuichi Imura; Minoru Nishida; Yoshiaki Yano; Katsumi Matsuzaki
Journal:  Biochemistry       Date:  2004-12-14       Impact factor: 3.162

9.  Actions of substance P, MIF, TRH and related peptides in the substantia nigra, caudate nucleus and nucleus accumbens.

Authors:  R D Pinnock; G N Woodruff; M J Turnbull
Journal:  Neuropharmacology       Date:  1983-06       Impact factor: 5.250

10.  Structural characterization and optimization of antibody-selected phage library mimotopes of an antigen associated with autoimmune recurrent thrombosis.

Authors:  D S Sem; B L Baker; E J Victoria; D S Jones; D Marquis; L Yu; J Parks; S M Coutts
Journal:  Biochemistry       Date:  1998-11-17       Impact factor: 3.162

View more
  7 in total

1.  NCAD, a database integrating the intrinsic conformational preferences of non-coded amino acids.

Authors:  Guillem Revilla-López; Juan Torras; David Curcó; Jordi Casanovas; M Isabel Calaza; David Zanuy; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Piotr Grodzinski; Carlos Alemán
Journal:  J Phys Chem B       Date:  2010-06-03       Impact factor: 2.991

2.  Stochastic simulation of structural properties of natively unfolded and denatured proteins.

Authors:  David Curcó; Catherine Michaux; Guillaume Roussel; Emmanuel Tinti; Eric A Perpète; Carlos Alemán
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

3.  Thermally denatured state determines refolding in lipase: mutational analysis.

Authors:  Shoeb Ahmad; Nalam Madhusudhana Rao
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

4.  Conformational profile of a proline-arginine hybrid.

Authors:  Guillermo Revilla-López; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Carlos Alemán; David Zanuy
Journal:  J Chem Inf Model       Date:  2010-10-25       Impact factor: 4.956

5.  Computational investigations of the stereoselectivities of proline-related catalysts for aldol reactions.

Authors:  Christophe Allemann; Joann M Um; K N Houk
Journal:  J Mol Catal A Chem       Date:  2010-06-01

6.  Conformational preferences of beta- and gamma-aminated proline analogues.

Authors:  Alejandra Flores-Ortega; Jordi Casanovas; Ruth Nussinov; Carlos Alemán
Journal:  J Phys Chem B       Date:  2008-10-09       Impact factor: 2.991

7.  In silico molecular engineering for a targeted replacement in a tumor-homing peptide.

Authors:  David Zanuy; Alejandra Flores-Ortega; Ana I Jiménez; M Isabel Calaza; Carlos Cativiela; Ruth Nussinov; Erkki Ruoslahti; Carlos Alemán
Journal:  J Phys Chem B       Date:  2009-06-04       Impact factor: 2.991

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.