Literature DB >> 29156309

Recent development of computational resources for new antibiotics discovery.

Hyun Uk Kim1, Kai Blin2, Sang Yup Lee1, Tilmann Weber3.   

Abstract

Understanding a complex working mechanism of biosynthetic gene clusters (BGCs) encoding secondary metabolites is a key to discovery of new antibiotics. Computational resources continue to be developed in order to better process increasing volumes of genome and chemistry data, and thereby better understand BGCs. In this context, this review highlights recent advances in computational resources for secondary metabolites with emphasis on genome mining, compound identification and dereplication as well as databases. We also introduce an updated version of Secondary Metabolite Bioinformatics Portal (SMBP; http://www.secondarymetabolites.org), which we previously released as a curated gateway to all the computational tools and databases useful for discovery and engineering of secondary metabolites.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29156309     DOI: 10.1016/j.mib.2017.10.027

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  10 in total

1.  Recent developments in self-resistance gene directed natural product discovery.

Authors:  Yan Yan; Nicholas Liu; Yi Tang
Journal:  Nat Prod Rep       Date:  2020-01-08       Impact factor: 13.423

2.  Characterization of siderophores from Escherichia coli strains through genome mining tools: an antiSMASH study.

Authors:  Levent Cavas; Ibrahim Kirkiz
Journal:  AMB Express       Date:  2022-06-15       Impact factor: 4.126

Review 3.  Recent Advances in Discovery of Lead Structures from Microbial Natural Products: Genomics- and Metabolomics-Guided Acceleration.

Authors:  Linda Sukmarini
Journal:  Molecules       Date:  2021-04-27       Impact factor: 4.411

4.  Antarctic Streptomyces fildesensis So13.3 strain as a promising source for antimicrobials discovery.

Authors:  Kattia Núñez-Montero; Claudio Lamilla; Michel Abanto; Fumito Maruyama; Milko A Jorquera; Andrés Santos; Jaime Martinez-Urtaza; Leticia Barrientos
Journal:  Sci Rep       Date:  2019-05-16       Impact factor: 4.379

5.  The Integration of Genome Mining, Comparative Genomics, and Functional Genetics for Biosynthetic Gene Cluster Identification.

Authors:  Ashley N Williams; Naveen Sorout; Alexander J Cameron; John Stavrinides
Journal:  Front Genet       Date:  2020-12-03       Impact factor: 4.599

Review 6.  Mining and unearthing hidden biosynthetic potential.

Authors:  Kirstin Scherlach; Christian Hertweck
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

Review 7.  Extending the "One Strain Many Compounds" (OSMAC) Principle to Marine Microorganisms.

Authors:  Stefano Romano; Stephen A Jackson; Sloane Patry; Alan D W Dobson
Journal:  Mar Drugs       Date:  2018-07-23       Impact factor: 5.118

Review 8.  CRISPR/Cas9-Based Editing of Streptomyces for Discovery, Characterization, and Production of Natural Products.

Authors:  Weixin Tao; Anna Yang; Zixin Deng; Yuhui Sun
Journal:  Front Microbiol       Date:  2018-07-24       Impact factor: 5.640

9.  Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.

Authors:  Snorre Sulheim; Fredrik A Fossheim; Alexander Wentzel; Eivind Almaas
Journal:  BMC Bioinformatics       Date:  2021-02-23       Impact factor: 3.169

10.  Green Synthesis of Silver-Decorated Magnetic Particles for Efficient and Reusable Antimicrobial Activity.

Authors:  Sachin V Otari; Vipin Chandra Kalia; Aarti Bisht; In-Won Kim; Jung-Kul Lee
Journal:  Materials (Basel)       Date:  2021-12-20       Impact factor: 3.623

  10 in total

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