Literature DB >> 34162873

Mining and unearthing hidden biosynthetic potential.

Kirstin Scherlach1, Christian Hertweck2,3.   

Abstract

Genetically encoded small molecules (secondary metabolites) play eminent roles in ecological interactions, as pathogenicity factors and as drug leads. Yet, these chemical mediators often evade detection, and the discovery of novel entities is hampered by low production and high rediscovery rates. These limitations may be addressed by genome mining for biosynthetic gene clusters, thereby unveiling cryptic metabolic potential. The development of sophisticated data mining methods and genetic and analytical tools has enabled the discovery of an impressive array of previously overlooked natural products. This review shows the newest developments in the field, highlighting compound discovery from unconventional sources and microbiomes.

Entities:  

Year:  2021        PMID: 34162873     DOI: 10.1038/s41467-021-24133-5

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  103 in total

Review 1.  Natural product discovery: past, present, and future.

Authors:  Leonard Katz; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2016-01-06       Impact factor: 3.346

Review 2.  Natural Products as Sources of New Drugs from 1981 to 2014.

Authors:  David J Newman; Gordon M Cragg
Journal:  J Nat Prod       Date:  2016-02-07       Impact factor: 4.050

3.  Triggering cryptic natural product biosynthesis in microorganisms.

Authors:  Kirstin Scherlach; Christian Hertweck
Journal:  Org Biomol Chem       Date:  2009-03-06       Impact factor: 3.876

Review 4.  Insights into the chemical logic and enzymatic machinery of NRPS assembly lines.

Authors:  Christopher T Walsh
Journal:  Nat Prod Rep       Date:  2016-02       Impact factor: 13.423

Review 5.  Chemical Mediators at the Bacterial-Fungal Interface.

Authors:  Kirstin Scherlach; Christian Hertweck
Journal:  Annu Rev Microbiol       Date:  2020-07-13       Impact factor: 15.500

Review 6.  Using natural products for drug discovery: the impact of the genomics era.

Authors:  Mingzi M Zhang; Yuan Qiao; Ee Lui Ang; Huimin Zhao
Journal:  Expert Opin Drug Discov       Date:  2017-03-14       Impact factor: 6.098

Review 7.  Linking genomics and metabolomics to chart specialized metabolic diversity.

Authors:  Justin J J van der Hooft; Hosein Mohimani; Anelize Bauermeister; Pieter C Dorrestein; Katherine R Duncan; Marnix H Medema
Journal:  Chem Soc Rev       Date:  2020-05-12       Impact factor: 54.564

Review 8.  RiPP antibiotics: biosynthesis and engineering potential.

Authors:  Graham A Hudson; Douglas A Mitchell
Journal:  Curr Opin Microbiol       Date:  2018-03-10       Impact factor: 7.934

Review 9.  Natural products from thioester reductase containing biosynthetic pathways.

Authors:  Michael W Mullowney; Ryan A McClure; Matthew T Robey; Neil L Kelleher; Regan J Thomson
Journal:  Nat Prod Rep       Date:  2018-09-19       Impact factor: 13.423

Review 10.  Computational Tools for Discovering and Engineering Natural Product Biosynthetic Pathways.

Authors:  Hengqian Ren; Chengyou Shi; Huimin Zhao
Journal:  iScience       Date:  2019-12-27
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  23 in total

Review 1.  Exploring Newer Biosynthetic Gene Clusters in Marine Microbial Prospecting.

Authors:  Manigundan Kaari; Radhakrishnan Manikkam; Abirami Baskaran
Journal:  Mar Biotechnol (NY)       Date:  2022-04-08       Impact factor: 3.619

2.  From Genome Mining to Protein Engineering: A Structural Bioinformatics Route.

Authors:  Derek J Smith
Journal:  Methods Mol Biol       Date:  2023

3.  Biosynthesis of Xylariolide D in Penicillium crustosum Implies a Chain Branching Reaction Catalyzed by a Highly Reducing Polyketide Synthase.

Authors:  Sina A Stierle; Shu-Ming Li
Journal:  J Fungi (Basel)       Date:  2022-05-09

4.  Evolution-Informed Discovery of the Naphthalenone Biosynthetic Pathway in Fungi.

Authors:  Olga V Mosunova; Jorge C Navarro-Muñoz; Diksha Haksar; Jacq van Neer; Jelmer Hoeksma; Jeroen den Hertog; Jérôme Collemare
Journal:  mBio       Date:  2022-05-26       Impact factor: 7.786

5.  Whole-Genome Sequencing of a Potential Ester-Synthesizing Bacterium Isolated from Fermented Golden Pomfret and Identification of Its Lipase Encoding Genes.

Authors:  Huifang Wang; Yanyan Wu; Yueqi Wang
Journal:  Foods       Date:  2022-06-30

6.  Unique Physiological and Genetic Features of Ofloxacin-Resistant Streptomyces Mutants.

Authors:  Kanata Hoshino; Ryoko Hamauzu; Hiroyuki Nakagawa; Shinya Kodani; Takeshi Hosaka
Journal:  Appl Environ Microbiol       Date:  2021-12-22       Impact factor: 5.005

Review 7.  Biomaterials and Bioactive Natural Products from Marine Invertebrates: From Basic Research to Innovative Applications.

Authors:  Giovanna Romano; Mariana Almeida; Ana Varela Coelho; Adele Cutignano; Luis G Gonçalves; Espen Hansen; Denis Khnykin; Tali Mass; Andreja Ramšak; Miguel S Rocha; Tiago H Silva; Michela Sugni; Loriano Ballarin; Anne-Marie Genevière
Journal:  Mar Drugs       Date:  2022-03-22       Impact factor: 6.085

Review 8.  Harnessing ortho-Quinone Methides in Natural Product Biosynthesis and Biocatalysis.

Authors:  Trevor N Purdy; Bradley S Moore; April L Lukowski
Journal:  J Nat Prod       Date:  2022-02-02       Impact factor: 4.803

9.  Antimicrobial resistance: progress and challenges in antibiotic discovery and anti-infective therapy.

Authors:  Tino Krell; Miguel A Matilla
Journal:  Microb Biotechnol       Date:  2021-10-05       Impact factor: 5.813

10.  ARTS-DB: a database for antibiotic resistant targets.

Authors:  Mehmet Direnç Mungan; Kai Blin; Nadine Ziemert
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

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