Literature DB >> 31912842

Recent developments in self-resistance gene directed natural product discovery.

Yan Yan1, Nicholas Liu, Yi Tang.   

Abstract

Covering: 2000 to 2019Natural products (NPs) are important sources of human therapeutic agents and pesticides. To prevent self-harm from bioactive NPs, some microbial producers employ self-resistance genes to protect themselves. One effective strategy is to employ a self-resistance enzyme (SRE), which is a slightly mutated version of the original metabolic enzyme, and is resistant to the toxic NP but is still functional. The presence of a SRE in a gene cluster can serve as a predictive window to the biological activity of the NPs synthesized by the pathway. In this highlight, we summarize representative examples of NP biosynthetic pathways that utilize self-resistance genes for protection. Recent discoveries based on self-resistance gene identification have helped in bridging the gap between activity-guided and genome-driven approaches for NP discovery and functional assignment.

Entities:  

Year:  2020        PMID: 31912842      PMCID: PMC7340575          DOI: 10.1039/c9np00050j

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  104 in total

Review 1.  DNA topoisomerases and their poisoning by anticancer and antibacterial drugs.

Authors:  Yves Pommier; Elisabetta Leo; HongLiang Zhang; Christophe Marchand
Journal:  Chem Biol       Date:  2010-05-28

Review 2.  Microbial genomics for the improvement of natural product discovery.

Authors:  Steven G Van Lanen; Ben Shen
Journal:  Curr Opin Microbiol       Date:  2006-05-02       Impact factor: 7.934

3.  Thirteen posttranslational modifications convert a 14-residue peptide into the antibiotic thiocillin.

Authors:  Laura C Wieland Brown; Michael G Acker; Jon Clardy; Christopher T Walsh; Michael A Fischbach
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-05       Impact factor: 11.205

4.  Antibiotics. Targeting DnaN for tuberculosis therapy using novel griselimycins.

Authors:  Angela Kling; Peer Lukat; Deepak V Almeida; Armin Bauer; Evelyne Fontaine; Sylvie Sordello; Nestor Zaburannyi; Jennifer Herrmann; Silke C Wenzel; Claudia König; Nicole C Ammerman; María Belén Barrio; Kai Borchers; Florence Bordon-Pallier; Mark Brönstrup; Gilles Courtemanche; Martin Gerlitz; Michel Geslin; Peter Hammann; Dirk W Heinz; Holger Hoffmann; Sylvie Klieber; Markus Kohlmann; Michael Kurz; Christine Lair; Hans Matter; Eric Nuermberger; Sandeep Tyagi; Laurent Fraisse; Jacques H Grosset; Sophie Lagrange; Rolf Müller
Journal:  Science       Date:  2015-06-05       Impact factor: 47.728

5.  A gene cluster for biosynthesis of the sesquiterpenoid antibiotic pentalenolactone in Streptomyces avermitilis.

Authors:  Charles N Tetzlaff; Zheng You; David E Cane; Satoshi Takamatsu; Satoshi Omura; Haruo Ikeda
Journal:  Biochemistry       Date:  2006-05-16       Impact factor: 3.162

6.  Identification of a gene cluster for biosynthesis of the sesquiterpene antibiotic, heptelidic acid, in Aspergillus oryzae.

Authors:  Yasutomo Shinohara; Ikuko Nishimura; Yasuji Koyama
Journal:  Biosci Biotechnol Biochem       Date:  2018-11-22       Impact factor: 2.043

7.  Fellutamide B is a potent inhibitor of the Mycobacterium tuberculosis proteasome.

Authors:  Gang Lin; Dongyang Li; Tamutenda Chidawanyika; Carl Nathan; Huilin Li
Journal:  Arch Biochem Biophys       Date:  2010-06-15       Impact factor: 4.013

8.  Investigations of valanimycin biosynthesis: elucidation of the role of seryl-tRNA.

Authors:  Ram P Garg; Xuelei L Qian; Lawrence B Alemany; Sean Moran; Ronald J Parry
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-01       Impact factor: 11.205

Review 9.  Metabolic Gene Clusters in Eukaryotes.

Authors:  Hans-Wilhelm Nützmann; Claudio Scazzocchio; Anne Osbourn
Journal:  Annu Rev Genet       Date:  2018-09-05       Impact factor: 13.826

10.  Genes for a beta-lactamase, a penicillin-binding protein and a transmembrane protein are clustered with the cephamycin biosynthetic genes in Nocardia lactamdurans.

Authors:  J J Coque; P Liras; J F Martín
Journal:  EMBO J       Date:  1993-02       Impact factor: 11.598

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  16 in total

1.  β-NAD as a building block in natural product biosynthesis.

Authors:  Lena Barra; Takayoshi Awakawa; Kohei Shirai; Zhijuan Hu; Ghader Bashiri; Ikuro Abe
Journal:  Nature       Date:  2021-12-08       Impact factor: 49.962

2.  Prospects for Antibacterial Discovery and Development.

Authors:  Thomas M Privalsky; Alexander M Soohoo; Jinhua Wang; Christopher T Walsh; Gerard D Wright; Eric M Gordon; Nathanael S Gray; Chaitan Khosla
Journal:  J Am Chem Soc       Date:  2021-12-03       Impact factor: 15.419

Review 3.  Metabolomics and genomics in natural products research: complementary tools for targeting new chemical entities.

Authors:  Lindsay K Caesar; Rana Montaser; Nancy P Keller; Neil L Kelleher
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

Review 4.  Subcellular localization of fungal specialized metabolites.

Authors:  Elizabeth Skellam
Journal:  Fungal Biol Biotechnol       Date:  2022-05-25

5.  Targeted Genome Mining Reveals the Biosynthetic Gene Clusters of Natural Product CYP51 Inhibitors.

Authors:  Nicholas Liu; Elizabeth D Abramyan; Wei Cheng; Bruno Perlatti; Colin J B Harvey; Gerald F Bills; Yi Tang
Journal:  J Am Chem Soc       Date:  2021-04-15       Impact factor: 15.419

6.  Biosynthesis of the Immunosuppressant (-)-FR901483.

Authors:  Zhuan Zhang; Yui Tamura; Mancheng Tang; Tianzhang Qiao; Michio Sato; Yoshihiro Otsu; Satoshi Sasamura; Masatoshi Taniguchi; Kenji Watanabe; Yi Tang
Journal:  J Am Chem Soc       Date:  2020-12-29       Impact factor: 15.419

7.  The need to innovate sample collection and library generation in microbial drug discovery: a focus on academia.

Authors:  Antonio Hernandez; Linh T Nguyen; Radhika Dhakal; Brian T Murphy
Journal:  Nat Prod Rep       Date:  2021-03-04       Impact factor: 13.423

8.  Harzianic Acid from Trichoderma afroharzianum Is a Natural Product Inhibitor of Acetohydroxyacid Synthase.

Authors:  Linan Xie; Xin Zang; Wei Cheng; Zhuan Zhang; Jiahai Zhou; Mengbin Chen; Yi Tang
Journal:  J Am Chem Soc       Date:  2021-06-16       Impact factor: 15.419

9.  Biosynthesis of the fungal glyceraldehyde-3-phosphate dehydrogenase inhibitor heptelidic acid and mechanism of self-resistance.

Authors:  Yan Yan; Xin Zang; Cooper S Jamieson; Hsiao-Ching Lin; K N Houk; Jiahai Zhou; Yi Tang
Journal:  Chem Sci       Date:  2020-08-19       Impact factor: 9.825

10.  Biosynthetic Interrogation of Soil Metagenomes Reveals Metamarin, an Uncommon Cyclomarin Congener with Activity against Mycobacterium tuberculosis.

Authors:  Lei Li; Logan W MacIntyre; Thahmina Ali; Riccardo Russo; Bimal Koirala; Yozen Hernandez; Sean F Brady
Journal:  J Nat Prod       Date:  2021-02-23       Impact factor: 4.050

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