Literature DB >> 33925414

Recent Advances in Discovery of Lead Structures from Microbial Natural Products: Genomics- and Metabolomics-Guided Acceleration.

Linda Sukmarini1.   

Abstract

Natural products (NPs) are evolutionarily optimized as drug-like molecules and remain the most consistently successful source of drugs and drug leads. They offer major opportunities for finding novel lead structures that are active against a broad spectrum of assay targets, particularly those from secondary metabolites of microbial origin. Due to traditional discovery approaches' limitations relying on untargeted screening methods, there is a growing trend to employ unconventional secondary metabolomics techniques. Aided by the more in-depth understanding of different biosynthetic pathways and the technological advancement in analytical instrumentation, the development of new methodologies provides an alternative that can accelerate discoveries of new lead-structures of natural origin. This present mini-review briefly discusses selected examples regarding advancements in bioinformatics and genomics (focusing on genome mining and metagenomics approaches), as well as bioanalytics (mass-spectrometry) towards the microbial NPs-based drug discovery and development. The selected recent discoveries from 2015 to 2020 are featured herein.

Entities:  

Keywords:  bioanalytics; bioinformatics; drug discovery; genome mining; natural products

Mesh:

Substances:

Year:  2021        PMID: 33925414     DOI: 10.3390/molecules26092542

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


  75 in total

Review 1.  Computational mass spectrometry for metabolomics: identification of metabolites and small molecules.

Authors:  Steffen Neumann; Sebastian Böcker
Journal:  Anal Bioanal Chem       Date:  2010-10-09       Impact factor: 4.142

2.  Integration of Molecular Networking and In-Silico MS/MS Fragmentation for Natural Products Dereplication.

Authors:  Pierre-Marie Allard; Tiphaine Péresse; Jonathan Bisson; Katia Gindro; Laurence Marcourt; Van Cuong Pham; Fanny Roussi; Marc Litaudon; Jean-Luc Wolfender
Journal:  Anal Chem       Date:  2016-03-01       Impact factor: 6.986

3.  The Supersized Class III Lanthipeptide Stackepeptin Displays Motif Multiplication in the Core Peptide.

Authors:  Natalia A Jungmann; Eric F van Herwerden; Manuela Hügelland; Roderich D Süssmuth
Journal:  ACS Chem Biol       Date:  2015-10-29       Impact factor: 5.100

4.  Combining Stable Isotope Labeling and Molecular Networking for Biosynthetic Pathway Characterization.

Authors:  Andreas Klitgaard; Jakob B Nielsen; Rasmus J N Frandsen; Mikael R Andersen; Kristian F Nielsen
Journal:  Anal Chem       Date:  2015-06-09       Impact factor: 6.986

Review 5.  Drug development in the era of precision medicine.

Authors:  Sarah A Dugger; Adam Platt; David B Goldstein
Journal:  Nat Rev Drug Discov       Date:  2017-12-08       Impact factor: 84.694

6.  Identification of Thiotetronic Acid Antibiotic Biosynthetic Pathways by Target-directed Genome Mining.

Authors:  Xiaoyu Tang; Jie Li; Natalie Millán-Aguiñaga; Jia Jia Zhang; Ellis C O'Neill; Juan A Ugalde; Paul R Jensen; Simone M Mantovani; Bradley S Moore
Journal:  ACS Chem Biol       Date:  2015-10-21       Impact factor: 5.100

7.  CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes.

Authors:  Thomas Wolf; Vladimir Shelest; Neetika Nath; Ekaterina Shelest
Journal:  Bioinformatics       Date:  2015-12-09       Impact factor: 6.937

8.  IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes.

Authors:  Michalis Hadjithomas; I-Min A Chen; Ken Chu; Jinghua Huang; Anna Ratner; Krishna Palaniappan; Evan Andersen; Victor Markowitz; Nikos C Kyrpides; Natalia N Ivanova
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

9.  Discovery and Characterization of Bicereucin, an Unusual d-Amino Acid-Containing Mixed Two-Component Lantibiotic.

Authors:  Liujie Huo; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2016-04-18       Impact factor: 15.419

Review 10.  Genome mining strategies for ribosomally synthesised and post-translationally modified peptides.

Authors:  Alicia H Russell; Andrew W Truman
Journal:  Comput Struct Biotechnol J       Date:  2020-06-25       Impact factor: 6.155

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  2 in total

1.  Chemometrics and genome mining reveal an unprecedented family of sugar acid-containing fungal nonribosomal cyclodepsipeptides.

Authors:  Chen Wang; Dongliang Xiao; Baoqing Dun; Miaomiao Yin; Adigo Setargie Tsega; Linan Xie; Wenhua Li; Qun Yue; Sibao Wang; Han Gao; Min Lin; Liwen Zhang; István Molnár; Yuquan Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-01       Impact factor: 12.779

Review 2.  Beyond Soil-Dwelling Actinobacteria: Fantastic Antibiotics and Where to Find Them.

Authors:  Javier Santos-Aberturas; Natalia M Vior
Journal:  Antibiotics (Basel)       Date:  2022-02-02
  2 in total

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