Literature DB >> 29156135

Fluorescent Probes of DNA Repair.

David L Wilson1, Eric T Kool1.   

Abstract

DNA repair is now understood to play a key role in a variety of disease states, most notably cancer. Tools for studying DNA have typically relied on traditional biochemical methods which are often laborious and indirect. Efforts to study the biology and therapeutic relevance of DNA repair pathways can be limited by such methods. Recently, specific fluorescent probes have been developed to aid in the study of DNA repair. Fluorescent probes offer the advantage of being able to directly assay for DNA repair activity in a simple, mix-and-measure format. This review will summarize the distinct classes of probe designs and their potential utility in varied research and preclinical settings.

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Year:  2017        PMID: 29156135      PMCID: PMC5976523          DOI: 10.1021/acschembio.7b00919

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  115 in total

1.  A highly sensitive strategy for base excision repair enzyme activity detection based on graphene oxide mediated fluorescence quenching and hybridization chain reaction.

Authors:  Qiang Xi; Jun-Jie Li; Wen-Fang Du; Ru-Qin Yu; Jian-Hui Jiang
Journal:  Analyst       Date:  2015-11-26       Impact factor: 4.616

2.  Adaptive Response Enzyme AlkB Preferentially Repairs 1-Methylguanine and 3-Methylthymine Adducts in Double-Stranded DNA.

Authors:  Fangyi Chen; Qi Tang; Ke Bian; Zachary T Humulock; Xuedong Yang; Marco Jost; Catherine L Drennan; John M Essigmann; Deyu Li
Journal:  Chem Res Toxicol       Date:  2016-03-15       Impact factor: 3.739

3.  Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase.

Authors:  J T Stivers; K W Pankiewicz; K A Watanabe
Journal:  Biochemistry       Date:  1999-01-19       Impact factor: 3.162

4.  Endonuclease IV cleaves apurinic/apyrimidinic sites in single-stranded DNA and its application for biosensing.

Authors:  Xiang-Juan Kong; Shuang Wu; Yao Cen; Ting-Ting Chen; Ru-Qin Yu; Xia Chu
Journal:  Analyst       Date:  2016-05-17       Impact factor: 4.616

5.  Separation-of-function mutants unravel the dual-reaction mode of human 8-oxoguanine DNA glycosylase.

Authors:  Bjørn Dalhus; Monika Forsbring; Ina Høydal Helle; Erik Sebastian Vik; Rune Johansen Forstrøm; Paul Hoff Backe; Ingrun Alseth; Magnar Bjørås
Journal:  Structure       Date:  2011-01-12       Impact factor: 5.006

6.  Highly sensitive fluorescence assay of T4 polynucleotide kinase activity and inhibition via enzyme-assisted signal amplification.

Authors:  Mangjuan Tao; Jing Zhang; Yan Jin; Baoxin Li
Journal:  Anal Biochem       Date:  2014-07-21       Impact factor: 3.365

7.  Preparation of heteroduplex enhanced green fluorescent protein plasmid for in vivo mismatch repair activity assay.

Authors:  Bisheng Zhou; Changjiang Huang; Junhua Yang; Jianxin Lu; Qiaoxiang Dong; Lu-Zhe Sun
Journal:  Anal Biochem       Date:  2009-02-25       Impact factor: 3.365

Review 8.  Therapeutic opportunities within the DNA damage response.

Authors:  Laurence H Pearl; Amanda C Schierz; Simon E Ward; Bissan Al-Lazikani; Frances M G Pearl
Journal:  Nat Rev Cancer       Date:  2015-03       Impact factor: 60.716

Review 9.  The DNA damage response and cancer therapy.

Authors:  Christopher J Lord; Alan Ashworth
Journal:  Nature       Date:  2012-01-18       Impact factor: 49.962

Review 10.  The comet assay for DNA damage and repair: principles, applications, and limitations.

Authors:  Andrew R Collins
Journal:  Mol Biotechnol       Date:  2004-03       Impact factor: 2.860

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  8 in total

1.  Fluorescence Probes for ALKBH2 Allow the Measurement of DNA Alkylation Repair and Drug Resistance Responses.

Authors:  David L Wilson; Andrew A Beharry; Avinash Srivastava; Timothy R O'Connor; Eric T Kool
Journal:  Angew Chem Int Ed Engl       Date:  2018-09-03       Impact factor: 15.336

2.  Ultrafast Oxime Formation Enables Efficient Fluorescence Light-up Measurement of DNA Base Excision.

Authors:  David L Wilson; Eric T Kool
Journal:  J Am Chem Soc       Date:  2019-11-27       Impact factor: 15.419

3.  An Excimer Clamp for Measuring Damaged-Base Excision by the DNA Repair Enzyme NTH1.

Authors:  Yong Woong Jun; David L Wilson; Anna M Kietrys; Elizabeth R Lotsof; Savannah G Conlon; Sheila S David; Eric T Kool
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-17       Impact factor: 15.336

Review 4.  Methodologies for detecting environmentally induced DNA damage and repair.

Authors:  Wentao Li; Aziz Sancar
Journal:  Environ Mol Mutagen       Date:  2020-02-29       Impact factor: 3.216

Review 5.  Unnatural bases for recognition of noncoding nucleic acid interfaces.

Authors:  Shiqin Miao; Yufeng Liang; Sarah Rundell; Debmalya Bhunia; Shekar Devari; Oliver Munyaradzi; Dennis Bong
Journal:  Biopolymers       Date:  2020-09-24       Impact factor: 2.505

6.  Inhibition by Tetrahydroquinoline Sulfonamide Derivatives of the Activity of Human 8-Oxoguanine DNA Glycosylase (OGG1) for Several Products of Oxidatively induced DNA Base Lesions.

Authors:  Melis Kant; Yu-Ki Tahara; Pawel Jaruga; Erdem Coskun; R Stephen Lloyd; Eric T Kool; Miral Dizdaroglu
Journal:  ACS Chem Biol       Date:  2020-12-17       Impact factor: 4.634

7.  A mechanism for semaphorin-induced apoptosis: DNA damage of endothelial and myogenic cells in primary cultures from skeletal muscle.

Authors:  Haynes Shek Hei Yuan; Sachin Katyal; Judy E Anderson
Journal:  Oncotarget       Date:  2018-04-27

8.  Molecular beacons with oxidized bases report on substrate specificity of DNA oxoguanine glycosylases.

Authors:  Jingjing Sun; Nicole M Antczak; Hailey L Gahlon; Shana J Sturla
Journal:  Chem Sci       Date:  2022-02-16       Impact factor: 9.825

  8 in total

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