Literature DB >> 19248754

Preparation of heteroduplex enhanced green fluorescent protein plasmid for in vivo mismatch repair activity assay.

Bisheng Zhou1, Changjiang Huang, Junhua Yang, Jianxin Lu, Qiaoxiang Dong, Lu-Zhe Sun.   

Abstract

Preparation of heteroduplexes in large quantities with high purity is essential for the measurement of DNA mismatch repair (MMR) activity. Here we report a rapid, less labor-intensive method for the preparation of a heteroduplex plasmid that expresses the enhanced green fluorescent protein (EGFP) if the mismatch is repaired correctly. The method involves the use of a wild-type and a mutated EGFP expression plasmid and a few steps of enzymatic digestion. When the constructed heteroduplex EGFP plasmid was transfected into MMR-proficient and -deficient cell lines, the number of EGFP-expressing cells was much higher in the MMR-proficient cells than in the MMR-deficient cells, suggesting that the heteroduplex can be used for MMR activity assay in live model systems.

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Year:  2009        PMID: 19248754      PMCID: PMC2670966          DOI: 10.1016/j.ab.2009.02.020

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  10 in total

1.  Mismatch repair assay.

Authors:  S E Corrette-Bennett; R S Lahue
Journal:  Methods Mol Biol       Date:  1999

2.  Preparation of heteroduplex DNA containing a mismatch base pair with magnetic beads.

Authors:  J J Tsai-Wu; H T Su; W H Fang; C H Wu
Journal:  Anal Biochem       Date:  1999-11-01       Impact factor: 3.365

3.  Construction and characterization of mismatch-containing circular DNA molecules competent for assessment of nick-directed human mismatch repair in vitro.

Authors:  Erik D Larson; David Nickens; James T Drummond
Journal:  Nucleic Acids Res       Date:  2002-02-01       Impact factor: 16.971

4.  An efficient method for the preparation of long heteroduplex DNA as substrate for mismatch repair by the Escherichia coli MutHLS system.

Authors:  Evangelos Thomas; Alfred Pingoud; Peter Friedhoff
Journal:  Biol Chem       Date:  2002-09       Impact factor: 3.915

5.  Measurement of DNA mismatch repair activity in live cells.

Authors:  Xiufen Lei; Yong Zhu; Alan Tomkinson; LuZhe Sun
Journal:  Nucleic Acids Res       Date:  2004-07-12       Impact factor: 16.971

Review 6.  DNA mismatch repair.

Authors:  Thomas A Kunkel; Dorothy A Erie
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

Review 7.  Mechanisms and functions of DNA mismatch repair.

Authors:  Guo-Min Li
Journal:  Cell Res       Date:  2008-01       Impact factor: 25.617

8.  Modification of a PCR-based site-directed mutagenesis method.

Authors:  C L Fisher; G K Pei
Journal:  Biotechniques       Date:  1997-10       Impact factor: 1.993

9.  Mismatch repair in human nuclear extracts. Quantitative analyses of excision of nicked circular mismatched DNA substrates, constructed by a new technique employing synthetic oligonucleotides.

Authors:  Huixian Wang; John B Hays
Journal:  J Biol Chem       Date:  2002-05-10       Impact factor: 5.157

Review 10.  Mammalian DNA mismatch repair.

Authors:  A B Buermeyer; S M Deschênes; S M Baker; R M Liskay
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

  10 in total
  17 in total

1.  DNA mismatch repair proteins are required for efficient herpes simplex virus 1 replication.

Authors:  Kareem N Mohni; Adam S Mastrocola; Ping Bai; Sandra K Weller; Christopher D Heinen
Journal:  J Virol       Date:  2011-09-28       Impact factor: 5.103

2.  The predicted truncation from a cancer-associated variant of the MSH2 initiation codon alters activity of the MSH2-MSH6 mismatch repair complex.

Authors:  Jennifer L Cyr; Graham D Brown; Jennifer Stroop; Christopher D Heinen
Journal:  Mol Carcinog       Date:  2011-08-11       Impact factor: 4.784

3.  Mismatch and base excision repair proficiency in murine embryonic stem cells.

Authors:  Elisia D Tichy; Li Liang; Li Deng; Jay Tischfield; Sandy Schwemberger; George Babcock; Peter J Stambrook
Journal:  DNA Repair (Amst)       Date:  2011-02-18

4.  Human pluripotent stem cells have a novel mismatch repair-dependent damage response.

Authors:  Bo Lin; Dipika Gupta; Christopher D Heinen
Journal:  J Biol Chem       Date:  2014-07-10       Impact factor: 5.157

Review 5.  Mechanisms maintaining genomic integrity in embryonic stem cells and induced pluripotent stem cells.

Authors:  Elisia D Tichy
Journal:  Exp Biol Med (Maywood)       Date:  2011-07-18

6.  In vitro studies of DNA mismatch repair proteins.

Authors:  Hui Geng; Chunwei Du; Siying Chen; Vincenzo Salerno; Candela Manfredi; Peggy Hsieh
Journal:  Anal Biochem       Date:  2011-02-15       Impact factor: 3.365

7.  Lynch syndrome-associated mutations in MSH2 alter DNA repair and checkpoint response functions in vivo.

Authors:  Adam S Mastrocola; Christopher D Heinen
Journal:  Hum Mutat       Date:  2010-10       Impact factor: 4.878

8.  Exo1 independent DNA mismatch repair involves multiple compensatory nucleases.

Authors:  Amar Desai; Stanton Gerson
Journal:  DNA Repair (Amst)       Date:  2014-07-15

Review 9.  Fluorescent Probes of DNA Repair.

Authors:  David L Wilson; Eric T Kool
Journal:  ACS Chem Biol       Date:  2017-11-30       Impact factor: 5.100

10.  The CREB Coactivator CRTC2 Is a Lymphoma Tumor Suppressor that Preserves Genome Integrity through Transcription of DNA Mismatch Repair Genes.

Authors:  Minggang Fang; Magnolia L Pak; Lynn Chamberlain; Wei Xing; Hongbo Yu; Michael R Green
Journal:  Cell Rep       Date:  2015-05-21       Impact factor: 9.423

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