Literature DB >> 29132641

Force Spectroscopy with 9-μs Resolution and Sub-pN Stability by Tailoring AFM Cantilever Geometry.

Devin T Edwards1, Jaevyn K Faulk1, Marc-André LeBlanc2, Thomas T Perkins3.   

Abstract

Atomic force microscopy (AFM)-based single-molecule force spectroscopy (SMFS) is a powerful yet accessible means to characterize the unfolding/refolding dynamics of individual molecules and resolve closely spaced, transiently occupied folding intermediates. On a modern commercial AFM, these applications and others are now limited by the mechanical properties of the cantilever. Specifically, AFM-based SMFS data quality is degraded by a commercial cantilever's limited combination of temporal resolution, force precision, and force stability. Recently, we modified commercial cantilevers with a focused ion beam to optimize their properties for SMFS. Here, we extend this capability by modifying a 40 × 18 μm2 cantilever into one terminated with a gold-coated, 4 × 4 μm2 reflective region connected to an uncoated 2-μm-wide central shaft. This "Warhammer" geometry achieved 8.5-μs resolution coupled with improved force precision and sub-pN stability over 100 s when measured on a commercial AFM. We highlighted this cantilever's biological utility by first resolving a calmodulin unfolding intermediate previously undetected by AFM and then measuring the stabilization of calmodulin by myosin light chain kinase at dramatically higher unfolding velocities than in previous AFM studies. More generally, enhancing data quality via an improved combination of time resolution, force precision, and force stability will broadly benefit biological applications of AFM. Published by Elsevier Inc.

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Year:  2017        PMID: 29132641      PMCID: PMC5770970          DOI: 10.1016/j.bpj.2017.10.023

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  26 in total

1.  Reversible unfolding of single RNA molecules by mechanical force.

Authors:  J Liphardt; B Onoa; S B Smith; I Tinoco; C Bustamante
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

2.  Computer-based redesign of a protein folding pathway.

Authors:  S Nauli; B Kuhlman; D Baker
Journal:  Nat Struct Biol       Date:  2001-07

3.  The complex folding network of single calmodulin molecules.

Authors:  Johannes Stigler; Fabian Ziegler; Anja Gieseke; J Christof M Gebhardt; Matthias Rief
Journal:  Science       Date:  2011-10-28       Impact factor: 47.728

4.  Routine and timely sub-picoNewton force stability and precision for biological applications of atomic force microscopy.

Authors:  Allison B Churnside; Ruby May A Sullan; Duc M Nguyen; Sara O Case; Matthew S Bull; Gavin M King; Thomas T Perkins
Journal:  Nano Lett       Date:  2012-06-15       Impact factor: 11.189

5.  A functional single-molecule binding assay via force spectroscopy.

Authors:  Yi Cao; M M Balamurali; Deepak Sharma; Hongbin Li
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-25       Impact factor: 11.205

Review 6.  Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy.

Authors:  Keir C Neuman; Attila Nagy
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

7.  Hidden dynamics in the unfolding of individual bacteriorhodopsin proteins.

Authors:  Hao Yu; Matthew G W Siewny; Devin T Edwards; Aric W Sanders; Thomas T Perkins
Journal:  Science       Date:  2017-03-03       Impact factor: 47.728

8.  Improved Force Spectroscopy Using Focused-Ion-Beam-Modified Cantilevers.

Authors:  J K Faulk; D T Edwards; M S Bull; T T Perkins
Journal:  Methods Enzymol       Date:  2016-10-31       Impact factor: 1.600

9.  High-resolution imaging of chemical and biological sites on living cells using peak force tapping atomic force microscopy.

Authors:  David Alsteens; Vincent Dupres; Sami Yunus; Jean-Paul Latgé; Jürgen J Heinisch; Yves F Dufrêne
Journal:  Langmuir       Date:  2012-11-30       Impact factor: 3.882

10.  Direct observation of transition paths during the folding of proteins and nucleic acids.

Authors:  Krishna Neupane; Daniel A N Foster; Derek R Dee; Hao Yu; Feng Wang; Michael T Woodside
Journal:  Science       Date:  2016-04-08       Impact factor: 47.728

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  12 in total

1.  FEATHER: Automated Analysis of Force Spectroscopy Unbinding and Unfolding Data via a Bayesian Algorithm.

Authors:  Patrick R Heenan; Thomas T Perkins
Journal:  Biophys J       Date:  2018-08-07       Impact factor: 4.033

2.  Piecewise All-Atom SMD Simulations Reveal Key Secondary Structures in Luciferase Unfolding Pathway.

Authors:  Pan Zhang; David Wang; Weitao Yang; Piotr E Marszalek
Journal:  Biophys J       Date:  2020-10-30       Impact factor: 4.033

3.  Warhammers for Peaceful Times.

Authors:  Piotr E Marszalek
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

4.  Membrane-Protein Unfolding Intermediates Detected with Enhanced Precision Using a Zigzag Force Ramp.

Authors:  David R Jacobson; Lyle Uyetake; Thomas T Perkins
Journal:  Biophys J       Date:  2019-12-13       Impact factor: 4.033

5.  Zig Zag AFM Protocol Reveals New Intermediate Folding States of Bacteriorhodopsin.

Authors:  Michael A Nash
Journal:  Biophys J       Date:  2019-12-13       Impact factor: 4.033

6.  Massively Parallelized Molecular Force Manipulation with On-Demand Thermal and Optical Control.

Authors:  Hanquan Su; Joshua M Brockman; Yuxin Duan; Navoneel Sen; Hemani Chhabra; Alisina Bazrafshan; Aaron T Blanchard; Travis Meyer; Brooke Andrews; Jonathan P K Doye; Yonggang Ke; R Brian Dyer; Khalid Salaita
Journal:  J Am Chem Soc       Date:  2021-11-11       Impact factor: 16.383

7.  Digital light processing in a hybrid atomic force microscope: In Situ, nanoscale characterization of the printing process.

Authors:  Callie I Higgins; Tobin E Brown; Jason P Killgore
Journal:  Addit Manuf       Date:  2021-02

8.  Energy landscapes of fast-folding proteins pushing the limits of atomic force microscope (AFM) pulling.

Authors:  Abhigyan Sengupta; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-11       Impact factor: 11.205

9.  Modulation of a protein-folding landscape revealed by AFM-based force spectroscopy notwithstanding instrumental limitations.

Authors:  Devin T Edwards; Marc-Andre LeBlanc; Thomas T Perkins
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 12.779

Review 10.  High-speed force spectroscopy: microsecond force measurements using ultrashort cantilevers.

Authors:  Claire Valotteau; Fidan Sumbul; Felix Rico
Journal:  Biophys Rev       Date:  2019-10-07
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