Literature DB >> 22694769

Routine and timely sub-picoNewton force stability and precision for biological applications of atomic force microscopy.

Allison B Churnside1, Ruby May A Sullan, Duc M Nguyen, Sara O Case, Matthew S Bull, Gavin M King, Thomas T Perkins.   

Abstract

Force drift is a significant, yet unresolved, problem in atomic force microscopy (AFM). We show that the primary source of force drift for a popular class of cantilevers is their gold coating, even though they are coated on both sides to minimize drift. Drift of the zero-force position of the cantilever was reduced from 900 nm for gold-coated cantilevers to 70 nm (N = 10; rms) for uncoated cantilevers over the first 2 h after wetting the tip; a majority of these uncoated cantilevers (60%) showed significantly less drift (12 nm, rms). Removing the gold also led to ∼10-fold reduction in reflected light, yet short-term (0.1-10 s) force precision improved. Moreover, improved force precision did not require extended settling; most of the cantilevers tested (9 out of 15) achieved sub-pN force precision (0.54 ± 0.02 pN) over a broad bandwidth (0.01-10 Hz) just 30 min after loading. Finally, this precision was maintained while stretching DNA. Hence, removing gold enables both routine and timely access to sub-pN force precision in liquid over extended periods (100 s). We expect that many current and future applications of AFM can immediately benefit from these improvements in force stability and precision.

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Year:  2012        PMID: 22694769      PMCID: PMC3397142          DOI: 10.1021/nl301166w

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  24 in total

1.  Unfolding pathways of individual bacteriorhodopsins.

Authors:  F Oesterhelt; D Oesterhelt; M Pfeiffer; A Engel; H E Gaub; D J Müller
Journal:  Science       Date:  2000-04-07       Impact factor: 47.728

2.  The complex folding network of single calmodulin molecules.

Authors:  Johannes Stigler; Fabian Ziegler; Anja Gieseke; J Christof M Gebhardt; Matthias Rief
Journal:  Science       Date:  2011-10-28       Impact factor: 47.728

3.  The noise of coated cantilevers.

Authors:  Aleksander Labuda; Jeffrey R Bates; Peter H Grütter
Journal:  Nanotechnology       Date:  2011-12-14       Impact factor: 3.874

4.  Bacteriorhodopsin folds into the membrane against an external force.

Authors:  Max Kessler; Kay E Gottschalk; Harald Janovjak; Daniel J Muller; Hermann E Gaub
Journal:  J Mol Biol       Date:  2006-01-06       Impact factor: 5.469

5.  Direct observation of active protein folding using lock-in force spectroscopy.

Authors:  Michael Schlierf; Felix Berkemeier; Matthias Rief
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

6.  Reduction of the damping on an AFM cantilever in fluid by the use of micropillars.

Authors:  Masaru Kawakami; Yukinori Taniguchi; Yuichi Hiratsuka; Masahiko Shimoike; D Alastair Smith
Journal:  Langmuir       Date:  2010-01-19       Impact factor: 3.882

7.  Automated setpoint adjustment for biological contact mode atomic force microscopy imaging.

Authors:  Ignacio Casuso; Simon Scheuring
Journal:  Nanotechnology       Date:  2010-01-22       Impact factor: 3.874

8.  The nature of the force-induced conformation transition of dsDNA studied by using single molecule force spectroscopy.

Authors:  Ningning Liu; Tianjia Bu; Yu Song; Wei Zhang; Jinjing Li; Wenke Zhang; Jiacong Shen; Hongbin Li
Journal:  Langmuir       Date:  2010-06-15       Impact factor: 3.882

9.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

10.  "Dip-Pen" nanolithography

Authors: 
Journal:  Science       Date:  1999-01-29       Impact factor: 47.728

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  17 in total

1.  Upgrades for the AFM.

Authors:  Daniel Evanko
Journal:  Nat Methods       Date:  2012-08       Impact factor: 28.547

2.  FEATHER: Automated Analysis of Force Spectroscopy Unbinding and Unfolding Data via a Bayesian Algorithm.

Authors:  Patrick R Heenan; Thomas T Perkins
Journal:  Biophys J       Date:  2018-08-07       Impact factor: 4.033

3.  Force Spectroscopy with 9-μs Resolution and Sub-pN Stability by Tailoring AFM Cantilever Geometry.

Authors:  Devin T Edwards; Jaevyn K Faulk; Marc-André LeBlanc; Thomas T Perkins
Journal:  Biophys J       Date:  2017-11-11       Impact factor: 4.033

4.  Warhammers for Peaceful Times.

Authors:  Piotr E Marszalek
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

5.  Biochemical Stimulation of Immune Cells and Measurement of Mechanical Responses Using Atomic Force Microscopy.

Authors:  Kenneth H Hu; Marc A Bruce; Jianwei Liu; Manish J Butte
Journal:  Curr Protoc Chem Biol       Date:  2019-02-01

6.  Improved Free-Energy Landscape Quantification Illustrated with a Computationally Designed Protein-Ligand Interaction.

Authors:  William J Van Patten; Robert Walder; Ayush Adhikari; Stephen R Okoniewski; Rashmi Ravichandran; Christine E Tinberg; David Baker; Thomas T Perkins
Journal:  Chemphyschem       Date:  2017-12-04       Impact factor: 3.102

Review 7.  Atomic force microscopy with sub-picoNewton force stability for biological applications.

Authors:  Ruby May A Sullan; Allison B Churnside; Duc M Nguyen; Matthew S Bull; Thomas T Perkins
Journal:  Methods       Date:  2013-04-04       Impact factor: 3.608

8.  Single molecule recordings of lysozyme activity.

Authors:  Yongki Choi; Gregory A Weiss; Philip G Collins
Journal:  Phys Chem Chem Phys       Date:  2013-09-28       Impact factor: 3.676

9.  Rapid Characterization of a Mechanically Labile α-Helical Protein Enabled by Efficient Site-Specific Bioconjugation.

Authors:  Robert Walder; Marc-André LeBlanc; William J Van Patten; Devin T Edwards; Jacob A Greenberg; Ayush Adhikari; Stephen R Okoniewski; Ruby May A Sullan; David Rabuka; Marcelo C Sousa; Thomas T Perkins
Journal:  J Am Chem Soc       Date:  2017-07-17       Impact factor: 15.419

Review 10.  Towards a Quantitative Understanding of Protein-Lipid Bilayer Interactions at the Single Molecule Level: Opportunities and Challenges.

Authors:  Gavin M King; Ioan Kosztin
Journal:  J Membr Biol       Date:  2020-11-16       Impact factor: 1.843

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