Literature DB >> 29131146

Synthetic microbial consortia enable rapid assembly of pure translation machinery.

Fernando Villarreal1, Luis E Contreras-Llano1, Michael Chavez1, Yunfeng Ding1, Jinzhen Fan1, Tingrui Pan1, Cheemeng Tan1.   

Abstract

Assembly of recombinant multiprotein systems requires multiple culturing and purification steps that scale linearly with the number of constituent proteins. This problem is particularly pronounced in the preparation of the 34 proteins involved in transcription and translation systems, which are fundamental biochemistry tools for reconstitution of cellular pathways ex vivo. Here, we engineer synthetic microbial consortia consisting of between 15 and 34 Escherichia coli strains to assemble the 34 proteins in a single culturing, lysis, and purification procedure. The expression of these proteins is controlled by synthetic genetic modules to produce the proteins at the correct ratios. We show that the pure multiprotein system is functional and reproducible, and has low protein contaminants. We also demonstrate its application in the screening of synthetic promoters and protease inhibitors. Our work establishes a novel strategy for producing pure translation machinery, which may be extended to the production of other multiprotein systems.

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Year:  2017        PMID: 29131146     DOI: 10.1038/nchembio.2514

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  42 in total

Review 1.  Towards synthetic microbial consortia for bioprocessing.

Authors:  Jasmine Shong; Manuel Rafael Jimenez Diaz; Cynthia H Collins
Journal:  Curr Opin Biotechnol       Date:  2012-03-01       Impact factor: 9.740

2.  SYNTHETIC BIOLOGY. Synthetic communities, the sum of parts.

Authors:  Brian P Teague; Ron Weiss
Journal:  Science       Date:  2015-08-28       Impact factor: 47.728

3.  Performance benchmarking of four cell-free protein expression systems.

Authors:  Dejan Gagoski; Mark E Polinkovsky; Sergey Mureev; Anne Kunert; Wayne Johnston; Yann Gambin; Kirill Alexandrov
Journal:  Biotechnol Bioeng       Date:  2015-10-07       Impact factor: 4.530

Review 4.  Engineering microbial consortia: a new frontier in synthetic biology.

Authors:  Katie Brenner; Lingchong You; Frances H Arnold
Journal:  Trends Biotechnol       Date:  2008-07-31       Impact factor: 19.536

5.  Growth rates made easy.

Authors:  Barry G Hall; Hande Acar; Anna Nandipati; Miriam Barlow
Journal:  Mol Biol Evol       Date:  2013-10-28       Impact factor: 16.240

Review 6.  Co-culture systems and technologies: taking synthetic biology to the next level.

Authors:  Lisa Goers; Paul Freemont; Karen M Polizzi
Journal:  J R Soc Interface       Date:  2014-07-06       Impact factor: 4.118

7.  Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system.

Authors:  Filippo Caschera; Vincent Noireaux
Journal:  Biochimie       Date:  2013-12-08       Impact factor: 4.079

8.  A spectrophotometric assay for quantitative measurement of aminoacyl-tRNA synthetase activity.

Authors:  Igor Cestari; Kenneth Stuart
Journal:  J Biomol Screen       Date:  2012-11-07

Review 9.  Synthetic microbial communities.

Authors:  Tobias Grosskopf; Orkun S Soyer
Journal:  Curr Opin Microbiol       Date:  2014-03-14       Impact factor: 7.934

10.  Rapid cell-free forward engineering of novel genetic ring oscillators.

Authors:  Henrike Niederholtmeyer; Zachary Z Sun; Yutaka Hori; Enoch Yeung; Amanda Verpoorte; Richard M Murray; Sebastian J Maerkl
Journal:  Elife       Date:  2015-10-05       Impact factor: 8.140

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  24 in total

1.  High-Throughput Experimentation Using Cell-Free Protein Synthesis Systems.

Authors:  Conary Meyer; Chuqing Zhou; Zecong Fang; Marjorie L Longo; Tingrui Pan; Cheemeng Tan
Journal:  Methods Mol Biol       Date:  2022

Review 2.  Biochemistry of Aminoacyl tRNA Synthetase and tRNAs and Their Engineering for Cell-Free and Synthetic Cell Applications.

Authors:  Ragunathan Bava Ganesh; Sebastian J Maerkl
Journal:  Front Bioeng Biotechnol       Date:  2022-07-01

3.  Microfluidic cap-to-dispense (μCD): a universal microfluidic-robotic interface for automated pipette-free high-precision liquid handling.

Authors:  Jingjing Wang; Ka Deng; Chuqing Zhou; Zecong Fang; Conary Meyer; Kaustubh Umesh-Anjali Deshpande; Zhihao Li; Xianqiang Mi; Qian Luo; Bruce D Hammock; Cheemeng Tan; Yan Chen; Tingrui Pan
Journal:  Lab Chip       Date:  2019-10-09       Impact factor: 6.799

Review 4.  Building protein networks in synthetic systems from the bottom-up.

Authors:  Jiyoung Shim; Chuqing Zhou; Ting Gong; Dasha Aleksandra Iserlis; Hamad Abdullah Linjawi; Matthew Wong; Tingrui Pan; Cheemeng Tan
Journal:  Biotechnol Adv       Date:  2021-04-12       Impact factor: 17.681

5.  Holistic engineering of cell-free systems through proteome-reprogramming synthetic circuits.

Authors:  Luis E Contreras-Llano; Conary Meyer; Yao Liu; Mridul Sarker; Sierin Lim; Marjorie L Longo; Cheemeng Tan
Journal:  Nat Commun       Date:  2020-06-19       Impact factor: 14.919

6.  A scalable peptide-GPCR language for engineering multicellular communication.

Authors:  Sonja Billerbeck; James Brisbois; Neta Agmon; Miguel Jimenez; Jasmine Temple; Michael Shen; Jef D Boeke; Virginia W Cornish
Journal:  Nat Commun       Date:  2018-11-29       Impact factor: 14.919

7.  Scaling up genetic circuit design for cellular computing: advances and prospects.

Authors:  Yiyu Xiang; Neil Dalchau; Baojun Wang
Journal:  Nat Comput       Date:  2018-10-05       Impact factor: 1.690

Review 8.  Cell-free synthesis of stable isotope-labeled internal standards for targeted quantitative proteomics.

Authors:  Ryohei Narumi; Keiko Masuda; Takeshi Tomonaga; Jun Adachi; Hiroki R Ueda; Yoshihiro Shimizu
Journal:  Synth Syst Biotechnol       Date:  2018-02-21

9.  BioBits™ Explorer: A modular synthetic biology education kit.

Authors:  Ally Huang; Peter Q Nguyen; Jessica C Stark; Melissa K Takahashi; Nina Donghia; Tom Ferrante; Aaron J Dy; Karen J Hsu; Rachel S Dubner; Keith Pardee; Michael C Jewett; James J Collins
Journal:  Sci Adv       Date:  2018-08-01       Impact factor: 14.136

10.  Paving the Way From the Lab to the Field: Using Synthetic Microbial Consortia to Produce High-Quality Crops.

Authors:  Zhaoyu Kong; Miranda Hart; Hongguang Liu
Journal:  Front Plant Sci       Date:  2018-10-05       Impact factor: 5.753

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