Literature DB >> 29107147

Solution scattering approaches to dynamical ordering in biomolecular systems.

Pau Bernadó1, Nobutaka Shimizu2, Giuseppe Zaccai3, Hironari Kamikubo4, Masaaki Sugiyama5.   

Abstract

Clarification of solution structure and its modulation in proteins and protein complexes is crucially important to understand dynamical ordering in macromolecular systems. Small-angle x-ray scattering (SAXS) and small-angle neutron scattering (SANS) are among the most powerful techniques to derive structural information. Recent progress in sample preparation, instruments and software analysis is opening up a new era for small-angle scattering. In this review, recent progress and trends of SAXS and SANS are introduced from the point of view of instrumentation and analysis, touching on general features and standard methods of small-angle scattering. This article is part of a Special Issue entitled "Biophysical Exploration of Dynamical Ordering of Biomolecular Systems" edited by Dr. Koichi Kato.
Copyright © 2017. Published by Elsevier B.V.

Keywords:  Ab-initio modeling; CV-SANS; Deuteration; Hybrid method; SEC-SANS

Mesh:

Substances:

Year:  2017        PMID: 29107147     DOI: 10.1016/j.bbagen.2017.10.015

Source DB:  PubMed          Journal:  Biochim Biophys Acta Gen Subj        ISSN: 0304-4165            Impact factor:   3.770


  10 in total

Review 1.  The role of small-angle scattering in structure-based screening applications.

Authors:  Po-Chia Chen; Janosch Hennig
Journal:  Biophys Rev       Date:  2018-10-10

Review 2.  Biophysical characterization of dynamic structures of immunoglobulin G.

Authors:  Saeko Yanaka; Rina Yogo; Koichi Kato
Journal:  Biophys Rev       Date:  2020-05-15

3.  The Measles Virus V Protein Binding Site to STAT2 Overlaps That of IRF9.

Authors:  Yuma Nagano; Aoi Sugiyama; Madoka Kimoto; Takuya Wakahara; Yasuyo Noguchi; Xinxin Jiang; Shinya Saijo; Nobutaka Shimizu; Nana Yabuno; Min Yao; Paul R Gooley; Gregory W Moseley; Takashi Tadokoro; Katsumi Maenaka; Toyoyuki Ose
Journal:  J Virol       Date:  2020-08-17       Impact factor: 5.103

4.  Ca2+ -induced structural changes and intramolecular interactions in N-terminal region of diacylglycerol kinase alpha.

Authors:  Daisuke Takahashi; Kento Yonezawa; Yuki Okizaki; Jose M M Caaveiro; Tadashi Ueda; Atsushi Shimada; Fumio Sakane; Nobutaka Shimizu
Journal:  Protein Sci       Date:  2022-07       Impact factor: 6.993

5.  Extracting time series matching a small-angle X-ray scattering profile from trajectories of molecular dynamics simulations.

Authors:  Masahiro Shimizu; Aya Okuda; Ken Morishima; Rintaro Inoue; Nobuhiro Sato; Yasuhiro Yunoki; Reiko Urade; Masaaki Sugiyama
Journal:  Sci Rep       Date:  2022-06-15       Impact factor: 4.996

Review 6.  Methods for Physical Characterization of Phase-Separated Bodies and Membrane-less Organelles.

Authors:  Diana M Mitrea; Bappaditya Chandra; Mylene C Ferrolino; Eric B Gibbs; Michele Tolbert; Michael R White; Richard W Kriwacki
Journal:  J Mol Biol       Date:  2018-07-24       Impact factor: 5.469

7.  Structural Analyses of Intrinsically Disordered Proteins by Small-Angle X-Ray Scattering.

Authors:  Amin Sagar; Dmitri Svergun; Pau Bernadó
Journal:  Methods Mol Biol       Date:  2020

8.  RNA Back and Forth: Looking through Ribozyme and Viroid Motifs.

Authors:  Marie-Christine Maurel; Fabrice Leclerc; Jacques Vergne; Giuseppe Zaccai
Journal:  Viruses       Date:  2019-03-21       Impact factor: 5.048

9.  Optimal Mutant Model of Human S100A3 Protein Citrullinated at Arg51 by Peptidylarginine Deiminase Type III and Its Solution Structural Properties.

Authors:  Kenji Ite; Kento Yonezawa; Kenichi Kitanishi; Nobutaka Shimizu; Masaki Unno
Journal:  ACS Omega       Date:  2020-02-18

Review 10.  Spotlight on the Ballet of Proteins: The Structural Dynamic Properties of Proteins Illuminated by Solution NMR.

Authors:  Yuji Tokunaga; Thibault Viennet; Haribabu Arthanari; Koh Takeuchi
Journal:  Int J Mol Sci       Date:  2020-03-06       Impact factor: 5.923

  10 in total

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