Literature DB >> 32410186

Biophysical characterization of dynamic structures of immunoglobulin G.

Saeko Yanaka1,2, Rina Yogo1,2, Koichi Kato3,4.   

Abstract

Immunoglobulin G (IgG) is a major antibody and functions as a hub linking specific antigen binding and recruitment of effector molecules typified by Fcγ receptors (FcγRs). These activities are associated primarily with interactions involving its Fab and Fc sites, respectively. An IgG molecule is characterized by a multiple domain modular structure with conserved N-glycosylation in Fc. The molecule displays significant freedom in internal motion on various spatiotemporal scales. The consequent conformational flexibility and plasticity of IgG glycoproteins are functionally significant and potentially important factors for design and engineering of antibodies with enhanced functionality. In this article, experimental and computational approaches are outlined for characterizing the conformational dynamics of IgG molecules in solution. In particular, the importance of integration of these approaches is highlighted, as illustrated by dynamic intramolecular interactions between the pair of N-glycans and their proximal amino acid residues in Fc. These interactions can critically affect effector functions mediated by human IgG1 and FcγRIII. Further improvements in individual biophysical techniques and their integration will advance understanding of dynamic behaviors of antibodies in physiological and pathological conditions. Such understanding will provide opportunities for engineering antibodies through controlling allosteric networks in IgG molecules.

Entities:  

Keywords:  Antibody; Core fucosylation; Dynamic conformational ensemble; Fcγ receptor; Immunoglobulin G; Molecular dynamics simulation; N-glycan; Nuclear magnetic resonance spectroscopy; Solution scattering; X-ray crystallography

Year:  2020        PMID: 32410186      PMCID: PMC7311591          DOI: 10.1007/s12551-020-00698-1

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  61 in total

1.  Isotope-edited nuclear magnetic resonance study of Fv fragment of anti-dansyl mouse monoclonal antibody: recognition of the dansyl hapten.

Authors:  A Odaka; J I Kim; H Takahashi; I Shimada; Y Arata
Journal:  Biochemistry       Date:  1992-11-10       Impact factor: 3.162

2.  Conformational dynamics of complementarity-determining region H3 of an anti-dansyl Fv fragment in the presence of its hapten.

Authors:  Masayoshi Nakasako; Toshihiko Oka; Masayasu Mashumo; Hideo Takahashi; Ichio Shimada; Yoshiki Yamaguchi; Koichi Kato; Yoji Arata
Journal:  J Mol Biol       Date:  2005-08-19       Impact factor: 5.469

3.  ABangle: characterising the VH-VL orientation in antibodies.

Authors:  J Dunbar; A Fuchs; J Shi; C M Deane
Journal:  Protein Eng Des Sel       Date:  2013-05-24       Impact factor: 1.650

4.  Unique carbohydrate-carbohydrate interactions are required for high affinity binding between FcgammaRIII and antibodies lacking core fucose.

Authors:  Claudia Ferrara; Sandra Grau; Christiane Jäger; Peter Sondermann; Peter Brünker; Inja Waldhauer; Michael Hennig; Armin Ruf; Arne Christian Rufer; Martine Stihle; Pablo Umaña; Jörg Benz
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-18       Impact factor: 11.205

5.  Dynamical structure of the hinge region of immunoglobulin G as studied by 13C nuclear magnetic resonance spectroscopy.

Authors:  H Kim; C Matsunaga; A Yoshino; K Kato; Y Arata
Journal:  J Mol Biol       Date:  1994-02-11       Impact factor: 5.469

6.  Hydrogen-exchange kinetics of the indole NH proton of the buried tryptophan in the constant fragment of the immunoglobulin light chain.

Authors:  Y Kawata; Y Goto; K Hamaguchi; F Hayashi; Y Kobayashi; Y Kyogoku
Journal:  Biochemistry       Date:  1988-01-12       Impact factor: 3.162

7.  Crowding in Cellular Environments at an Atomistic Level from Computer Simulations.

Authors:  Michael Feig; Isseki Yu; Po-Hung Wang; Grzegorz Nawrocki; Yuji Sugita
Journal:  J Phys Chem B       Date:  2017-07-12       Impact factor: 2.991

8.  Site-specific N-glycosylation analysis of soluble Fcγ receptor IIIb in human serum.

Authors:  Hirokazu Yagi; Daisuke Takakura; Lubka T Roumenina; Wolf Herman Fridman; Catherine Sautès-Fridman; Nana Kawasaki; Koichi Kato
Journal:  Sci Rep       Date:  2018-02-09       Impact factor: 4.379

9.  Importance of the Side Chain at Position 296 of Antibody Fc in Interactions with FcγRIIIa and Other Fcγ Receptors.

Authors:  Yuya Isoda; Hirokazu Yagi; Tadashi Satoh; Mami Shibata-Koyama; Kazuhiro Masuda; Mitsuo Satoh; Koichi Kato; Shigeru Iida
Journal:  PLoS One       Date:  2015-10-07       Impact factor: 3.240

10.  Elucidation of potential sites for antibody engineering by fluctuation editing.

Authors:  Saeko Yanaka; Yoshitaka Moriwaki; Kouhei Tsumoto; Kenji Sugase
Journal:  Sci Rep       Date:  2017-08-30       Impact factor: 4.379

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  6 in total

1.  Effect of Dietary Zinc Methionine Supplementation on Growth Performance, Immune Function and Intestinal Health of Cherry Valley Ducks Challenged With Avian Pathogenic Escherichia coli.

Authors:  Yaqi Chang; Jia Mei; Ting Yang; Zhenyu Zhang; Guangmang Liu; Hua Zhao; Xiaoling Chen; Gang Tian; Jingyi Cai; Bing Wu; Fali Wu; Gang Jia
Journal:  Front Microbiol       Date:  2022-05-03       Impact factor: 6.064

Review 2.  Antibodies Inhibiting the Type III Secretion System of Gram-Negative Pathogenic Bacteria.

Authors:  Julia A Hotinger; Aaron E May
Journal:  Antibodies (Basel)       Date:  2020-07-27

3.  Rigid monoclonal antibodies improve detection of SARS-CoV-2 nucleocapsid protein.

Authors:  Curtis D Hodge; Daniel J Rosenberg; Mateusz Wilamowski; Andrzej Joachimiak; Greg L Hura; Michal Hammel
Journal:  bioRxiv       Date:  2021-01-13

4.  Rigid monoclonal antibodies improve detection of SARS-CoV-2 nucleocapsid protein.

Authors:  Curtis D Hodge; Daniel J Rosenberg; Patricia Grob; Mateusz Wilamowski; Andrzej Joachimiak; Greg L Hura; Michal Hammel
Journal:  MAbs       Date:  2021 Jan-Dec       Impact factor: 5.857

5.  Quantitative Visualization of the Interaction between Complement Component C1 and Immunoglobulin G: The Effect of CH1 Domain Deletion.

Authors:  Saeko Yanaka; Shigetaka Nishiguchi; Rina Yogo; Hiroki Watanabe; Jiana Shen; Hirokazu Yagi; Takayuki Uchihashi; Koichi Kato
Journal:  Int J Mol Sci       Date:  2022-02-14       Impact factor: 5.923

6.  IL-1β-dependent extravasation of preexisting lung-restricted autoantibodies during lung transplantation activates complement and mediates primary graft dysfunction.

Authors:  Wenbin Yang; Emily Jeong Cerier; Félix L Núñez-Santana; Qiang Wu; Yuanqing Yan; Chitaru Kurihara; Xianpeng Liu; Anjana Yeldandi; Nigar Khurram; Diego Avella-Patino; Haiying Sun; G R Scott Budinger; Daniel Kreisel; Thalachallour Mohanakumar; Emilia Lecuona; Ankit Bharat
Journal:  J Clin Invest       Date:  2022-10-17       Impact factor: 19.456

  6 in total

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