Literature DB >> 22334356

Model-based analysis of multishell diffusion MR data for tractography: how to get over fitting problems.

Saad Jbabdi1, Stamatios N Sotiropoulos, Alexander M Savio, Manuel Graña, Timothy E J Behrens.   

Abstract

In this article, we highlight an issue that arises when using multiple b-values in a model-based analysis of diffusion MR data for tractography. The non-monoexponential decay, commonly observed in experimental data, is shown to induce overfitting in the distribution of fiber orientations when not considered in the model. Extra fiber orientations perpendicular to the main orientation arise to compensate for the slower apparent signal decay at higher b-values. We propose a simple extension to the ball and stick model based on a continuous gamma distribution of diffusivities, which significantly improves the fitting and reduces the overfitting. Using in vivo experimental data, we show that this model outperforms a simpler, noise floor model, especially at the interfaces between brain tissues, suggesting that partial volume effects are a major cause of the observed non-monoexponential decay. This model may be helpful for future data acquisition strategies that may attempt to combine multiple shells to improve estimates of fiber orientations in white matter and near the cortex.
Copyright © 2012 Wiley Periodicals, Inc.

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Year:  2012        PMID: 22334356      PMCID: PMC3359399          DOI: 10.1002/mrm.24204

Source DB:  PubMed          Journal:  Magn Reson Med        ISSN: 0740-3194            Impact factor:   4.668


  39 in total

1.  Orientationally invariant indices of axon diameter and density from diffusion MRI.

Authors:  Daniel C Alexander; Penny L Hubbard; Matt G Hall; Elizabeth A Moore; Maurice Ptito; Geoff J M Parker; Tim B Dyrby
Journal:  Neuroimage       Date:  2010-05-23       Impact factor: 6.556

2.  Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; Alan Connelly
Journal:  Neuroimage       Date:  2007-02-21       Impact factor: 6.556

3.  A model-based deconvolution approach to solve fiber crossing in diffusion-weighted MR imaging.

Authors:  Flavio Dell'Acqua; Giovanna Rizzo; Paola Scifo; Rafael Alonso Clarke; Giuseppe Scotti; Ferruccio Fazio
Journal:  IEEE Trans Biomed Eng       Date:  2007-03       Impact factor: 4.538

4.  Bayesian analysis of neuroimaging data in FSL.

Authors:  Mark W Woolrich; Saad Jbabdi; Brian Patenaude; Michael Chappell; Salima Makni; Timothy Behrens; Christian Beckmann; Mark Jenkinson; Stephen M Smith
Journal:  Neuroimage       Date:  2008-11-13       Impact factor: 6.556

5.  Deterministic and probabilistic tractography based on complex fibre orientation distributions.

Authors:  Maxime Descoteaux; Rachid Deriche; Thomas R Knösche; Alfred Anwander
Journal:  IEEE Trans Med Imaging       Date:  2009-02       Impact factor: 10.048

6.  The B-matrix must be rotated when correcting for subject motion in DTI data.

Authors:  Alexander Leemans; Derek K Jones
Journal:  Magn Reson Med       Date:  2009-06       Impact factor: 4.668

7.  AxCaliber: a method for measuring axon diameter distribution from diffusion MRI.

Authors:  Yaniv Assaf; Tamar Blumenfeld-Katzir; Yossi Yovel; Peter J Basser
Journal:  Magn Reson Med       Date:  2008-06       Impact factor: 4.668

Review 8.  On high b diffusion imaging in the human brain: ruminations and experimental insights.

Authors:  Robert V Mulkern; Steven J Haker; Stephan E Maier
Journal:  Magn Reson Imaging       Date:  2009-06-10       Impact factor: 2.546

9.  Diffusion orientation transform revisited.

Authors:  Erick Jorge Canales-Rodríguez; Ching-Po Lin; Yasser Iturria-Medina; Chun-Hung Yeh; Kuan-Hung Cho; Lester Melie-García
Journal:  Neuroimage       Date:  2009-10-06       Impact factor: 6.556

10.  Deconvolution in diffusion spectrum imaging.

Authors:  Erick Jorge Canales-Rodríguez; Yasser Iturria-Medina; Yasser Alemán-Gómez; Lester Melie-García
Journal:  Neuroimage       Date:  2009-12-03       Impact factor: 6.556

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  130 in total

1.  Hierarchical Heterogeneity across Human Cortex Shapes Large-Scale Neural Dynamics.

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Journal:  Neuron       Date:  2019-02-07       Impact factor: 17.173

2.  Increased connectivity between sensorimotor and attentional areas in Parkinson's disease.

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Journal:  Neuroradiology       Date:  2015-07-15       Impact factor: 2.804

3.  A Template and Probabilistic Atlas of the Human Sensorimotor Tracts using Diffusion MRI.

Authors:  Derek B Archer; David E Vaillancourt; Stephen A Coombes
Journal:  Cereb Cortex       Date:  2018-05-01       Impact factor: 5.357

4.  Estimation of white matter fiber parameters from compressed multiresolution diffusion MRI using sparse Bayesian learning.

Authors:  Pramod Kumar Pisharady; Stamatios N Sotiropoulos; Julio M Duarte-Carvajalino; Guillermo Sapiro; Christophe Lenglet
Journal:  Neuroimage       Date:  2017-06-29       Impact factor: 6.556

5.  PCLR: phase-constrained low-rank model for compressive diffusion-weighted MRI.

Authors:  Hao Gao; Longchuan Li; Kai Zhang; Weifeng Zhou; Xiaoping Hu
Journal:  Magn Reson Med       Date:  2013-12-10       Impact factor: 4.668

6.  Determining Cardiac Fiber Orientation Using FSL and Registered Ultrasound/DTI volumes.

Authors:  James Dormer; Xulei Qin; Ming Shen; Silun Wang; Xiaodong Zhang; Rong Jiang; Mary B Wagner; Baowei Fei
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-04-01

7.  Cortical fibers orientation mapping using in-vivo whole brain 7 T diffusion MRI.

Authors:  Omer F Gulban; Federico De Martino; An T Vu; Essa Yacoub; Kamil Uğurbil; Christophe Lenglet
Journal:  Neuroimage       Date:  2018-05-10       Impact factor: 6.556

Review 8.  The Human Connectome Project's neuroimaging approach.

Authors:  Matthew F Glasser; Stephen M Smith; Daniel S Marcus; Jesper L R Andersson; Edward J Auerbach; Timothy E J Behrens; Timothy S Coalson; Michael P Harms; Mark Jenkinson; Steen Moeller; Emma C Robinson; Stamatios N Sotiropoulos; Junqian Xu; Essa Yacoub; Kamil Ugurbil; David C Van Essen
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

9.  Group-wise parcellation of the cortex through multi-scale spectral clustering.

Authors:  Sarah Parisot; Salim Arslan; Jonathan Passerat-Palmbach; William M Wells; Daniel Rueckert
Journal:  Neuroimage       Date:  2016-05-15       Impact factor: 6.556

10.  The Human Connectome Project and beyond: initial applications of 300 mT/m gradients.

Authors:  Jennifer A McNab; Brian L Edlow; Thomas Witzel; Susie Y Huang; Himanshu Bhat; Keith Heberlein; Thorsten Feiweier; Kecheng Liu; Boris Keil; Julien Cohen-Adad; M Dylan Tisdall; Rebecca D Folkerth; Hannah C Kinney; Lawrence L Wald
Journal:  Neuroimage       Date:  2013-05-24       Impact factor: 6.556

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