Literature DB >> 29100940

Multimodal surface matching with higher-order smoothness constraints.

Emma C Robinson1, Kara Garcia2, Matthew F Glasser3, Zhengdao Chen4, Timothy S Coalson4, Antonios Makropoulos5, Jelena Bozek6, Robert Wright7, Andreas Schuh5, Matthew Webster8, Jana Hutter9, Anthony Price9, Lucilio Cordero Grande9, Emer Hughes9, Nora Tusor9, Philip V Bayly10, David C Van Essen4, Stephen M Smith8, A David Edwards9, Joseph Hajnal9, Mark Jenkinson8, Ben Glocker5, Daniel Rueckert5.   

Abstract

In brain imaging, accurate alignment of cortical surfaces is fundamental to the statistical sensitivity and spatial localisation of group studies, and cortical surface-based alignment has generally been accepted to be superior to volume-based approaches at aligning cortical areas. However, human subjects have considerable variation in cortical folding, and in the location of functional areas relative to these folds. This makes alignment of cortical areas a challenging problem. The Multimodal Surface Matching (MSM) tool is a flexible, spherical registration approach that enables accurate registration of surfaces based on a variety of different features. Using MSM, we have previously shown that driving cross-subject surface alignment, using areal features, such as resting state-networks and myelin maps, improves group task fMRI statistics and map sharpness. However, the initial implementation of MSM's regularisation function did not penalize all forms of surface distortion evenly. In some cases, this allowed peak distortions to exceed neurobiologically plausible limits, unless regularisation strength was increased to a level which prevented the algorithm from fully maximizing surface alignment. Here we propose and implement a new regularisation penalty, derived from physically relevant equations of strain (deformation) energy, and demonstrate that its use leads to improved and more robust alignment of multimodal imaging data. In addition, since spherical warps incorporate projection distortions that are unavoidable when mapping from a convoluted cortical surface to the sphere, we also propose constraints that enforce smooth deformation of cortical anatomies. We test the impact of this approach for longitudinal modelling of cortical development for neonates (born between 31 and 43 weeks of post-menstrual age) and demonstrate that the proposed method increases the biological interpretability of the distortion fields and improves the statistical significance of population-based analysis relative to other spherical methods.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biomechanical priors; Discrete optimisation; Longitudinal registration; Neonatal brain development; Surface-based cortical registration

Mesh:

Year:  2017        PMID: 29100940      PMCID: PMC5991912          DOI: 10.1016/j.neuroimage.2017.10.037

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  56 in total

1.  Mapping human cortical areas in vivo based on myelin content as revealed by T1- and T2-weighted MRI.

Authors:  Matthew F Glasser; David C Van Essen
Journal:  J Neurosci       Date:  2011-08-10       Impact factor: 6.167

2.  Cytoarchitecture of the cerebral cortex--more than localization.

Authors:  K Amunts; A Schleicher; K Zilles
Journal:  Neuroimage       Date:  2007-03-03       Impact factor: 6.556

3.  Approximate labeling via graph cuts based on linear programming.

Authors:  Nikos Komodakis; Georgios Tziritas
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2007-08       Impact factor: 6.226

Review 4.  Deformable medical image registration: setting the state of the art with discrete methods.

Authors:  Ben Glocker; Aristeidis Sotiras; Nikos Komodakis; Nikos Paragios
Journal:  Annu Rev Biomed Eng       Date:  2011-08-15       Impact factor: 9.590

5.  Toward a comprehensive framework for the spatiotemporal statistical analysis of longitudinal shape data.

Authors:  S Durrleman; X Pennec; A Trouvé; J Braga; G Gerig; N Ayache
Journal:  Int J Comput Vis       Date:  2013-05       Impact factor: 7.410

6.  A multi-modal parcellation of human cerebral cortex.

Authors:  Timothy S Coalson; Emma C Robinson; Carl D Hacker; Matthew F Glasser; John Harwell; Essa Yacoub; Kamil Ugurbil; Jesper Andersson; Christian F Beckmann; Mark Jenkinson; Stephen M Smith; David C Van Essen
Journal:  Nature       Date:  2016-07-20       Impact factor: 49.962

7.  Function-based intersubject alignment of human cortical anatomy.

Authors:  Mert R Sabuncu; Benjamin D Singer; Bryan Conroy; Ronald E Bryan; Peter J Ramadge; James V Haxby
Journal:  Cereb Cortex       Date:  2010-01       Impact factor: 5.357

8.  MSM: a new flexible framework for Multimodal Surface Matching.

Authors:  Emma C Robinson; Saad Jbabdi; Matthew F Glasser; Jesper Andersson; Gregory C Burgess; Michael P Harms; Stephen M Smith; David C Van Essen; Mark Jenkinson
Journal:  Neuroimage       Date:  2014-06-02       Impact factor: 6.556

9.  Cortical folding of the preterm brain: a longitudinal analysis of extremely preterm born neonates using spectral matching.

Authors:  Eliza Orasanu; Andrew Melbourne; Manuel Jorge Cardoso; Herve Lomabert; Giles S Kendall; Nicola J Robertson; Neil Marlow; Sebastien Ourselin
Journal:  Brain Behav       Date:  2016-05-17       Impact factor: 2.708

10.  Parcellating cortical functional networks in individuals.

Authors:  Danhong Wang; Randy L Buckner; Michael D Fox; Daphne J Holt; Avram J Holmes; Sophia Stoecklein; Georg Langs; Ruiqi Pan; Tianyi Qian; Kuncheng Li; Justin T Baker; Steven M Stufflebeam; Kai Wang; Xiaomin Wang; Bo Hong; Hesheng Liu
Journal:  Nat Neurosci       Date:  2015-11-09       Impact factor: 24.884

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  74 in total

1.  The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction.

Authors:  Antonios Makropoulos; Emma C Robinson; Andreas Schuh; Robert Wright; Sean Fitzgibbon; Jelena Bozek; Serena J Counsell; Johannes Steinweg; Katy Vecchiato; Jonathan Passerat-Palmbach; Gregor Lenz; Filippo Mortari; Tencho Tenev; Eugene P Duff; Matteo Bastiani; Lucilio Cordero-Grande; Emer Hughes; Nora Tusor; Jacques-Donald Tournier; Jana Hutter; Anthony N Price; Rui Pedro A G Teixeira; Maria Murgasova; Suresh Victor; Christopher Kelly; Mary A Rutherford; Stephen M Smith; A David Edwards; Joseph V Hajnal; Mark Jenkinson; Daniel Rueckert
Journal:  Neuroimage       Date:  2018-01-31       Impact factor: 6.556

2.  Cerebral cortical folding, parcellation, and connectivity in humans, nonhuman primates, and mice.

Authors:  David C Van Essen; Chad J Donahue; Timothy S Coalson; Henry Kennedy; Takuya Hayashi; Matthew F Glasser
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-23       Impact factor: 11.205

3.  Unsupervised Learning for Spherical Surface Registration.

Authors:  Fenqiang Zhao; Zhengwang Wu; Li Wang; Weili Lin; Shunren Xia; Dinggang Shen; Gang Li
Journal:  Mach Learn Med Imaging       Date:  2020-09-29

Review 4.  Development and Evolution of Cerebral and Cerebellar Cortex.

Authors:  David C Van Essen; Chad J Donahue; Matthew F Glasser
Journal:  Brain Behav Evol       Date:  2018-08-10       Impact factor: 1.808

5.  Improved gray matter surface based spatial statistics in neuroimaging studies.

Authors:  Prasanna Parvathaneni; Ilwoo Lyu; Yuankai Huo; Baxter P Rogers; Kurt G Schilling; Vishwesh Nath; Justin A Blaber; Allison E Hainline; Adam W Anderson; Neil D Woodward; Bennett A Landman
Journal:  Magn Reson Imaging       Date:  2019-05-22       Impact factor: 2.546

6.  Adolescent Decision-Making Under Risk: Neural Correlates and Sex Differences.

Authors:  Ozlem Korucuoglu; Michael P Harms; James T Kennedy; Semyon Golosheykin; Serguei V Astafiev; Deanna M Barch; Andrey P Anokhin
Journal:  Cereb Cortex       Date:  2020-04-14       Impact factor: 5.357

7.  Hierarchical spherical deformation for cortical surface registration.

Authors:  Ilwoo Lyu; Hakmook Kang; Neil D Woodward; Martin A Styner; Bennett A Landman
Journal:  Med Image Anal       Date:  2019-06-29       Impact factor: 8.545

8.  The impact of traditional neuroimaging methods on the spatial localization of cortical areas.

Authors:  Timothy S Coalson; David C Van Essen; Matthew F Glasser
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-20       Impact factor: 11.205

9.  Hierarchical Spherical Deformation for Shape Correspondence.

Authors:  Ilwoo Lyu; Martin A Styner; Bennett A Landman
Journal:  Med Image Comput Comput Assist Interv       Date:  2018-09-26

10.  Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data.

Authors:  Matthew F Glasser; Timothy S Coalson; Janine D Bijsterbosch; Samuel J Harrison; Michael P Harms; Alan Anticevic; David C Van Essen; Stephen M Smith
Journal:  Neuroimage       Date:  2018-08-02       Impact factor: 6.556

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