Literature DB >> 291002

In vitro core particle and nucleosome assembly at physiological ionic strength.

A Ruiz-Carrillo, J L Jorcano, G Eder, R Lurz.   

Abstract

Nucleosome core particles have been efficiently assembled in vitro by direct interaction of histones and DNA at physiological ionic strength, as assayed by digestion with DNases, supercoiling of relaxed circular DNA, and electron microscopy. Reconstitution was achieved either by the simultaneous addition of all core histones, or by the sequential binding of H3 . H4 tetramer and H2A . H2B dimer to DNA. Micrococcal nuclease digestion and electron microscopy studies indicated that there is heterogeneity in the spacings at which core particles are assembly on the DNA. Length measurements of oligomeric DNA produced during the course of the digestion suggest that the core histone octamer can organize 167 (+/- 4) rather than 145 base pairs of DNA, the extra 20 base pairs being quickly digested. Binding of histone H1 to core particles resulted in the protection of about 165 base pairs of DNA from nuclease attack. Because the core histone octamer is fully dissociated into H3 . H4 tetramer and H2A . H2B dimer at physiological ionic strength, our results would suggest that in vivo core particle assembly may also occur by interaction of these two complexes on the nascent DNA.

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Year:  1979        PMID: 291002      PMCID: PMC383809          DOI: 10.1073/pnas.76.7.3284

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Assembly of newly replicated chromatin.

Authors:  A Worcel; S Han; M L Wong
Journal:  Cell       Date:  1978-11       Impact factor: 41.582

2.  DNA-DNA gyrase complex: the wrapping of the DNA duplex outside the enzyme.

Authors:  L F Liu; J C Wang
Journal:  Cell       Date:  1978-11       Impact factor: 41.582

3.  DNA supercoiling by Xenopus laevis oocyte extracts: requirement for a nuclear factor.

Authors:  M I Baldi; E Mattoccia; G P Tocchini-Valentini
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

4.  H3.H4 tetramer directs DNA and core histone octamer assembly in the nucleosome core particle.

Authors:  J L Jorcano; A Ruiz-Carrillo
Journal:  Biochemistry       Date:  1979-03-06       Impact factor: 3.162

5.  Stability of nucleosomes in native and reconstituted chromatins.

Authors:  J E Germond; M Bellard; P Oudet; P Chambon
Journal:  Nucleic Acids Res       Date:  1976-11       Impact factor: 16.971

6.  Compact oligomers and nucleosome phasing.

Authors:  K Tatchell; K E Van Holde
Journal:  Proc Natl Acad Sci U S A       Date:  1978-08       Impact factor: 11.205

7.  Supercoiling energy and nucleosome formation: the role of the arginine-rich histone kernel.

Authors:  R D Camerini-Otero; G Felsenfeld
Journal:  Nucleic Acids Res       Date:  1977       Impact factor: 16.971

Review 8.  Structure of chromatin.

Authors:  R D Kornberg
Journal:  Annu Rev Biochem       Date:  1977       Impact factor: 23.643

Review 9.  Chromatin.

Authors:  G Felsenfeld
Journal:  Nature       Date:  1978-01-12       Impact factor: 49.962

10.  Assembly of SV40 chromatin in a cell-free system from Xenopus eggs.

Authors:  R A Laskey; A D Mills; N R Morris
Journal:  Cell       Date:  1977-02       Impact factor: 41.582

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  31 in total

Review 1.  Chromatin proteins are determinants of centromere function.

Authors:  J A Sharp; P D Kaufman
Journal:  Curr Top Microbiol Immunol       Date:  2003       Impact factor: 4.291

2.  Compaction kinetics on single DNAs: purified nucleosome reconstitution systems versus crude extract.

Authors:  Gaudeline Wagner; Aurélien Bancaud; Jean-Pierre Quivy; Cédric Clapier; Geneviève Almouzni; Jean-Louis Viovy
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

3.  ATP dependent histone phosphorylation and nucleosome assembly in a human cell free extract.

Authors:  S Banerjee; G R Bennion; M W Goldberg; T D Allen
Journal:  Nucleic Acids Res       Date:  1991-11-11       Impact factor: 16.971

4.  Assembly of nucleosome-like structures mediated by cauliflower DNA topoisomerase.

Authors:  H Fukata; K Ohgami; H Fukasawa
Journal:  Plant Mol Biol       Date:  1989-06       Impact factor: 4.076

5.  Histone H1 represses transcription from minichromosomes assembled in vitro.

Authors:  A Shimamura; M Sapp; A Rodriguez-Campos; A Worcel
Journal:  Mol Cell Biol       Date:  1989-12       Impact factor: 4.272

6.  Hyperacetylated histones facilitate chromatin assembly in vitro.

Authors:  M Cotten; R Chalkley
Journal:  Nucleic Acids Res       Date:  1985-01-25       Impact factor: 16.971

7.  Nucleosome phasing on a DNA fragment from the replication origin of simian virus 40 and rephasing upon cruciform formation of the DNA.

Authors:  C Nobile; J Nickol; R G Martin
Journal:  Mol Cell Biol       Date:  1986-08       Impact factor: 4.272

8.  Multistep pathway for replication-dependent nucleosome assembly.

Authors:  R Fotedar; J M Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

9.  Minichromosome assembly accompanying repair-type DNA synthesis in Xenopus oocytes.

Authors:  M Ryoji; E Tominna; W Yasui
Journal:  Nucleic Acids Res       Date:  1989-12-25       Impact factor: 16.971

10.  Effect of the B--Z transition in poly(dG-m5dC) . poly(dG-m5dC) on nucleosome formation.

Authors:  J Nickol; M Behe; G Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  1982-03       Impact factor: 11.205

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