Literature DB >> 31429126

Using Large Datasets to Understand Nanotechnology.

Kalina Paunovska1, David Loughrey1, Cory D Sago1, Robert Langer2,3, James E Dahlman1.   

Abstract

Advances in sequencing technologies have made studying biological processes with genomics, transcriptomics, and proteomics commonplace. As a result, this suite of increasingly integrated techniques is well positioned to study drug delivery, a process that is influenced by many biomolecules working in concert. Omics-based approaches can be used to study the vast nanomaterial chemical space as well as the biological factors that affect the safety, toxicity, and efficacy of nanotechnologies. The generation and analysis of large datasets, methods to interpret them, and dataset applications to nanomaterials to date, are demonstrated here. Finally, new approaches for how sequencing-generated datasets can answer fundamental questions in nanotechnology based drug delivery are proposed.
© 2019 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  big data; drug delivery; nanotechnology; next-generation sequencing

Mesh:

Year:  2019        PMID: 31429126      PMCID: PMC6810779          DOI: 10.1002/adma.201902798

Source DB:  PubMed          Journal:  Adv Mater        ISSN: 0935-9648            Impact factor:   30.849


  134 in total

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Journal:  Nat Methods       Date:  2010-08       Impact factor: 28.547

2.  Melanoma growth effects on molecular clearance from tumors and biodistribution into systemic tissues versus draining lymph nodes.

Authors:  Nathan Andrew Rohner; Susan Napier Thomas
Journal:  J Control Release       Date:  2015-12-23       Impact factor: 9.776

3.  Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.

Authors:  Evan Z Macosko; Anindita Basu; Rahul Satija; James Nemesh; Karthik Shekhar; Melissa Goldman; Itay Tirosh; Allison R Bialas; Nolan Kamitaki; Emily M Martersteck; John J Trombetta; David A Weitz; Joshua R Sanes; Alex K Shalek; Aviv Regev; Steven A McCarroll
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

4.  Editorial: Drug Delivery: Too Much Complexity, Not Enough Reproducibility?

Authors:  Jean-Christophe Leroux
Journal:  Angew Chem Int Ed Engl       Date:  2017-10-02       Impact factor: 15.336

5.  Targeted delivery of RNAi therapeutics with endogenous and exogenous ligand-based mechanisms.

Authors:  Akin Akinc; William Querbes; Soma De; June Qin; Maria Frank-Kamenetsky; K Narayanannair Jayaprakash; Muthusamy Jayaraman; Kallanthottathil G Rajeev; William L Cantley; J Robert Dorkin; James S Butler; Liuliang Qin; Timothy Racie; Andrew Sprague; Eugenio Fava; Anja Zeigerer; Michael J Hope; Marino Zerial; Dinah W Y Sah; Kevin Fitzgerald; Mark A Tracy; Muthiah Manoharan; Victor Koteliansky; Antonin de Fougerolles; Martin A Maier
Journal:  Mol Ther       Date:  2010-05-11       Impact factor: 11.454

6.  Transferrin-functionalized nanoparticles lose their targeting capabilities when a biomolecule corona adsorbs on the surface.

Authors:  Anna Salvati; Andrzej S Pitek; Marco P Monopoli; Kanlaya Prapainop; Francesca Baldelli Bombelli; Delyan R Hristov; Philip M Kelly; Christoffer Åberg; Eugene Mahon; Kenneth A Dawson
Journal:  Nat Nanotechnol       Date:  2013-01-20       Impact factor: 39.213

7.  What would you do if you could sequence everything?

Authors:  Avak Kahvejian; John Quackenbush; John F Thompson
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

8.  Investigating the impact of nanoparticle size on active and passive tumor targeting efficiency.

Authors:  Edward A Sykes; Juan Chen; Gang Zheng; Warren C W Chan
Journal:  ACS Nano       Date:  2014-05-22       Impact factor: 15.881

9.  Ecological interactions among Saccharomyces cerevisiae strains: insight into the dominance phenomenon.

Authors:  Roberto Pérez-Torrado; Kalliopi Rantsiou; Benedeta Perrone; Elisabeth Navarro-Tapia; Amparo Querol; Luca Cocolin
Journal:  Sci Rep       Date:  2017-03-07       Impact factor: 4.379

10.  The biomolecular corona is retained during nanoparticle uptake and protects the cells from the damage induced by cationic nanoparticles until degraded in the lysosomes.

Authors:  Fengjuan Wang; Lu Yu; Marco P Monopoli; Peter Sandin; Eugene Mahon; Anna Salvati; Kenneth A Dawson
Journal:  Nanomedicine       Date:  2013-05-07       Impact factor: 5.307

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  16 in total

1.  A Potent Branched-Tail Lipid Nanoparticle Enables Multiplexed mRNA Delivery and Gene Editing In Vivo.

Authors:  Khalid A Hajj; Jilian R Melamed; Namit Chaudhary; Nicholas G Lamson; Rebecca L Ball; Saigopalakrishna S Yerneni; Kathryn A Whitehead
Journal:  Nano Lett       Date:  2020-06-09       Impact factor: 11.189

2.  Mild Innate Immune Activation Overrides Efficient Nanoparticle-Mediated RNA Delivery.

Authors:  Melissa P Lokugamage; Zubao Gan; Chiara Zurla; Joel Levin; Fatima Z Islam; Sujay Kalathoor; Manaka Sato; Cory D Sago; Philip J Santangelo; James E Dahlman
Journal:  Adv Mater       Date:  2019-11-19       Impact factor: 30.849

Review 3.  Nano-biotechnology, an applicable approach for sustainable future.

Authors:  Nikta Shahcheraghi; Hasti Golchin; Zahra Sadri; Yasaman Tabari; Forough Borhanifar; Shadi Makani
Journal:  3 Biotech       Date:  2022-02-09       Impact factor: 2.406

4.  Increased PIP3 activity blocks nanoparticle mRNA delivery.

Authors:  Kalina Paunovska; Alejandro Da Silva Sanchez; Matthew T Foster; David Loughrey; Emmeline L Blanchard; Fatima Z Islam; Zubao Gan; Athanasios Mantalaris; Philip J Santangelo; James E Dahlman
Journal:  Sci Adv       Date:  2020-07-22       Impact factor: 14.136

5.  A modular approach toward producing nanotherapeutics targeting the innate immune system.

Authors:  Mandy M T van Leent; Anu E Meerwaldt; Alexandre Berchouchi; Yohana C Toner; Marianne E Burnett; Emma D Klein; Anna Vera D Verschuur; Sheqouia A Nauta; Jazz Munitz; Geoffrey Prévot; Esther M van Leeuwen; Farideh Ordikhani; Vera P Mourits; Claudia Calcagno; Philip M Robson; George Soultanidis; Thomas Reiner; Rick R M Joosten; Heiner Friedrich; Joren C Madsen; Ewelina Kluza; Roy van der Meel; Leo A B Joosten; Mihai G Netea; Jordi Ochando; Zahi A Fayad; Carlos Pérez-Medina; Willem J M Mulder; Abraham J P Teunissen
Journal:  Sci Adv       Date:  2021-03-05       Impact factor: 14.957

Review 6.  Power in Numbers: Harnessing Combinatorial and Integrated Screens to Advance Nanomedicine.

Authors:  Natalie Boehnke; Paula T Hammond
Journal:  JACS Au       Date:  2021-11-23

Review 7.  Drug delivery systems for RNA therapeutics.

Authors:  Kalina Paunovska; David Loughrey; James E Dahlman
Journal:  Nat Rev Genet       Date:  2022-01-04       Impact factor: 59.581

Review 8.  Nanotoxicity: a challenge for future medicine

Authors:  Ramazan Akçan; Halit Canberk Aydogan; Mahmut Şerif Yildirim; Burak Taştekin; Necdet Sağlam
Journal:  Turk J Med Sci       Date:  2020-06-23       Impact factor: 0.973

9.  Profiling of Sub-Lethal in Vitro Effects of Multi-Walled Carbon Nanotubes Reveals Changes in Chemokines and Chemokine Receptors.

Authors:  Sandeep Keshavan; Fernando Torres Andón; Audrey Gallud; Wei Chen; Knut Reinert; Lang Tran; Bengt Fadeel
Journal:  Nanomaterials (Basel)       Date:  2021-03-30       Impact factor: 5.076

10.  Synthesis of Escherichia coli OmpA Oral Nanoparticles and Evaluation of Immune Functions against the Major Etiologic Agent of Cow Mastitis.

Authors:  Xiang Liu; Wei Sun; Nana Wu; Na Rong; Chao Kang; Sijie Jian; Chunlin Chen; Chen Chen; Xiaoying Zhang
Journal:  Vaccines (Basel)       Date:  2021-03-23
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