Literature DB >> 28428369

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors.

Alexandra-Chloé Villani1,2, Rahul Satija3,4,5, Gary Reynolds6, Siranush Sarkizova3, Karthik Shekhar3, James Fletcher6, Morgane Griesbeck7, Andrew Butler4,5, Shiwei Zheng4,5, Suzan Lazo8, Laura Jardine6, David Dixon6, Emily Stephenson6, Emil Nilsson9, Ida Grundberg9, David McDonald6, Andrew Filby6, Weibo Li3,2, Philip L De Jager3,10, Orit Rozenblatt-Rosen3, Andrew A Lane3,8, Muzlifah Haniffa11,12, Aviv Regev1,13,14, Nir Hacohen1,2.   

Abstract

Dendritic cells (DCs) and monocytes play a central role in pathogen sensing, phagocytosis, and antigen presentation and consist of multiple specialized subtypes. However, their identities and interrelationships are not fully understood. Using unbiased single-cell RNA sequencing (RNA-seq) of ~2400 cells, we identified six human DCs and four monocyte subtypes in human blood. Our study reveals a new DC subset that shares properties with plasmacytoid DCs (pDCs) but potently activates T cells, thus redefining pDCs; a new subdivision within the CD1C+ subset of DCs; the relationship between blastic plasmacytoid DC neoplasia cells and healthy DCs; and circulating progenitor of conventional DCs (cDCs). Our revised taxonomy will enable more accurate functional and developmental analyses as well as immune monitoring in health and disease.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 28428369      PMCID: PMC5775029          DOI: 10.1126/science.aah4573

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  57 in total

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Authors:  Sergei Doulatov; Faiyaz Notta; Elisa Laurenti; John E Dick
Journal:  Cell Stem Cell       Date:  2012-02-03       Impact factor: 24.633

Review 2.  Design and Analysis of Single-Cell Sequencing Experiments.

Authors:  Dominic Grün; Alexander van Oudenaarden
Journal:  Cell       Date:  2015-11-05       Impact factor: 41.582

Review 3.  Siglec-mediated regulation of immune cell function in disease.

Authors:  Matthew S Macauley; Paul R Crocker; James C Paulson
Journal:  Nat Rev Immunol       Date:  2014-09-19       Impact factor: 53.106

4.  An imbalance of two functionally and phenotypically different subsets of plasmacytoid dendritic cells characterizes the dysfunctional immune regulation in multiple sclerosis.

Authors:  Nicholas Schwab; Alla L Zozulya; Bernd C Kieseier; Klaus V Toyka; Heinz Wiendl
Journal:  J Immunol       Date:  2010-03-31       Impact factor: 5.422

Review 5.  A genomic approach to human autoimmune diseases.

Authors:  Virginia Pascual; Damien Chaussabel; Jacques Banchereau
Journal:  Annu Rev Immunol       Date:  2010       Impact factor: 28.527

6.  Interferon-producing killer dendritic cells provide a link between innate and adaptive immunity.

Authors:  Camie W Chan; Emily Crafton; Hong-Ni Fan; James Flook; Kiyoshi Yoshimura; Mario Skarica; Dirk Brockstedt; Thomas W Dubensky; Monique F Stins; Lewis L Lanier; Drew M Pardoll; Franck Housseau
Journal:  Nat Med       Date:  2006-01-29       Impact factor: 53.440

7.  CD2 distinguishes two subsets of human plasmacytoid dendritic cells with distinct phenotype and functions.

Authors:  Toshimichi Matsui; John E Connolly; Mark Michnevitz; Damien Chaussabel; Chun-I Yu; Casey Glaser; Sasha Tindle; Marc Pypaert; Heidi Freitas; Bernard Piqueras; Jacques Banchereau; A Karolina Palucka
Journal:  J Immunol       Date:  2009-06-01       Impact factor: 5.422

8.  A CD2 high-expressing stress-resistant human plasmacytoid dendritic-cell subset.

Authors:  Christian Bryant; Phillip D Fromm; Fiona Kupresanin; Georgina Clark; Kenneth Lee; Candice Clarke; Pablo A Silveira; Hayley Suen; Ross Brown; Elizabeth Newman; Ilona Cunningham; P Joy Ho; John Gibson; Kenneth Bradstock; Douglas Joshua; Derek Nj Hart
Journal:  Immunol Cell Biol       Date:  2016-01-21       Impact factor: 5.126

9.  Leukemia-associated activating mutation of Flt3 expands dendritic cells and alters T cell responses.

Authors:  Colleen M Lau; Simone A Nish; Nir Yogev; Ari Waisman; Steven L Reiner; Boris Reizis
Journal:  J Exp Med       Date:  2016-02-22       Impact factor: 14.307

10.  Defining human dendritic cell progenitors by multiparametric flow cytometry.

Authors:  Gaëlle Breton; Jaeyop Lee; Kang Liu; Michel C Nussenzweig
Journal:  Nat Protoc       Date:  2015-08-20       Impact factor: 13.491

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  736 in total

1.  Human bone marrow assessment by single-cell RNA sequencing, mass cytometry, and flow cytometry.

Authors:  Karolyn A Oetjen; Katherine E Lindblad; Meghali Goswami; Gege Gui; Pradeep K Dagur; Catherine Lai; Laura W Dillon; J Philip McCoy; Christopher S Hourigan
Journal:  JCI Insight       Date:  2018-12-06

2.  The phosphatidylethanolamine biosynthesis pathway provides a new target for cancer chemotherapy.

Authors:  Yuan Guan; Xinyu Chen; Manhong Wu; Wan Zhu; Ahmed Arslan; Saori Takeda; Mindie H Nguyen; Ravindra Majeti; Dan Thomas; Ming Zheng; Gary Peltz
Journal:  J Hepatol       Date:  2019-11-22       Impact factor: 25.083

3.  SITC cancer immunotherapy resource document: a compass in the land of biomarker discovery.

Authors:  Siwen Hu-Lieskovan; Srabani Bhaumik; Kavita Dhodapkar; Jean-Charles J B Grivel; Sumati Gupta; Brent A Hanks; Sylvia Janetzki; Thomas O Kleen; Yoshinobu Koguchi; Amanda W Lund; Cristina Maccalli; Yolanda D Mahnke; Ruslan D Novosiadly; Senthamil R Selvan; Tasha Sims; Yingdong Zhao; Holden T Maecker
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4.  CCL5 mediates CD40-driven CD4+ T cell tumor infiltration and immunity.

Authors:  Austin P Huffman; Jeffrey H Lin; Samuel I Kim; Katelyn T Byrne; Robert H Vonderheide
Journal:  JCI Insight       Date:  2020-05-21

Review 5.  Role of chemokines, innate and adaptive immunity.

Authors:  Kurt A Zimmerman; Katharina Hopp; Michal Mrug
Journal:  Cell Signal       Date:  2020-04-20       Impact factor: 4.315

Review 6.  It takes a village: Phagocytes play a central role in fungal immunity.

Authors:  Michael B Feldman; Jatin M Vyas; Michael K Mansour
Journal:  Semin Cell Dev Biol       Date:  2018-06-12       Impact factor: 7.727

Review 7.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

8.  Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment.

Authors:  Anuja Sathe; Susan M Grimes; Billy T Lau; Jiamin Chen; Carlos Suarez; Robert J Huang; George Poultsides; Hanlee P Ji
Journal:  Clin Cancer Res       Date:  2020-02-14       Impact factor: 12.531

9.  Atlas of the Immune Cell Repertoire in Mouse Atherosclerosis Defined by Single-Cell RNA-Sequencing and Mass Cytometry.

Authors:  Holger Winkels; Erik Ehinger; Melanie Vassallo; Konrad Buscher; Huy Q Dinh; Kouji Kobiyama; Anouk A J Hamers; Clément Cochain; Ehsan Vafadarnejad; Antoine-Emmanuel Saliba; Alma Zernecke; Akula Bala Pramod; Amlan K Ghosh; Nathaly Anto Michel; Natalie Hoppe; Ingo Hilgendorf; Andreas Zirlik; Catherine C Hedrick; Klaus Ley; Dennis Wolf
Journal:  Circ Res       Date:  2018-03-15       Impact factor: 17.367

Review 10.  Report of the National Heart, Lung, and Blood Institute Working Group on Hypertension: Barriers to Translation.

Authors:  Curt D Sigmund; Robert M Carey; Lawrence J Appel; Donna K Arnett; Hayden B Bosworth; William C Cushman; Zorina S Galis; Melissa Green Parker; John E Hall; David G Harrison; Alicia A McDonough; Holly L Nicastro; Suzanne Oparil; John W Osborn; Mohan K Raizada; Jacqueline D Wright; Young S Oh
Journal:  Hypertension       Date:  2020-02-17       Impact factor: 10.190

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