Literature DB >> 29059288

Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision.

Haiguang Wen1,2, Junxing Shi1,2, Yizhen Zhang1,2, Kun-Han Lu1,2, Jiayue Cao2,3, Zhongming Liu1,2,3.   

Abstract

Convolutional neural network (CNN) driven by image recognition has been shown to be able to explain cortical responses to static pictures at ventral-stream areas. Here, we further showed that such CNN could reliably predict and decode functional magnetic resonance imaging data from humans watching natural movies, despite its lack of any mechanism to account for temporal dynamics or feedback processing. Using separate data, encoding and decoding models were developed and evaluated for describing the bi-directional relationships between the CNN and the brain. Through the encoding models, the CNN-predicted areas covered not only the ventral stream, but also the dorsal stream, albeit to a lesser degree; single-voxel response was visualized as the specific pixel pattern that drove the response, revealing the distinct representation of individual cortical location; cortical activation was synthesized from natural images with high-throughput to map category representation, contrast, and selectivity. Through the decoding models, fMRI signals were directly decoded to estimate the feature representations in both visual and semantic spaces, for direct visual reconstruction and semantic categorization, respectively. These results corroborate, generalize, and extend previous findings, and highlight the value of using deep learning, as an all-in-one model of the visual cortex, to understand and decode natural vision.

Entities:  

Mesh:

Year:  2018        PMID: 29059288      PMCID: PMC6215471          DOI: 10.1093/cercor/bhx268

Source DB:  PubMed          Journal:  Cereb Cortex        ISSN: 1047-3211            Impact factor:   5.357


  63 in total

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4.  Performance-optimized hierarchical models predict neural responses in higher visual cortex.

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Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-08       Impact factor: 11.205

Review 5.  Neural mechanisms of selective visual attention.

Authors:  R Desimone; J Duncan
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6.  Distributed and overlapping representations of faces and objects in ventral temporal cortex.

Authors:  J V Haxby; M I Gobbini; M L Furey; A Ishai; J L Schouten; P Pietrini
Journal:  Science       Date:  2001-09-28       Impact factor: 47.728

7.  Identifying natural images from human brain activity.

Authors:  Kendrick N Kay; Thomas Naselaris; Ryan J Prenger; Jack L Gallant
Journal:  Nature       Date:  2008-03-05       Impact factor: 49.962

8.  Correspondences between retinotopic areas and myelin maps in human visual cortex.

Authors:  Rouhollah O Abdollahi; Hauke Kolster; Matthew F Glasser; Emma C Robinson; Timothy S Coalson; Donna Dierker; Mark Jenkinson; David C Van Essen; Guy A Orban
Journal:  Neuroimage       Date:  2014-06-24       Impact factor: 6.556

9.  Comparison of deep neural networks to spatio-temporal cortical dynamics of human visual object recognition reveals hierarchical correspondence.

Authors:  Radoslaw Martin Cichy; Aditya Khosla; Dimitrios Pantazis; Antonio Torralba; Aude Oliva
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10.  The minimal preprocessing pipelines for the Human Connectome Project.

Authors:  Matthew F Glasser; Stamatios N Sotiropoulos; J Anthony Wilson; Timothy S Coalson; Bruce Fischl; Jesper L Andersson; Junqian Xu; Saad Jbabdi; Matthew Webster; Jonathan R Polimeni; David C Van Essen; Mark Jenkinson
Journal:  Neuroimage       Date:  2013-05-11       Impact factor: 6.556

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  40 in total

1.  Transferring and generalizing deep-learning-based neural encoding models across subjects.

Authors:  Haiguang Wen; Junxing Shi; Wei Chen; Zhongming Liu
Journal:  Neuroimage       Date:  2018-04-27       Impact factor: 6.556

2.  Variational autoencoder: An unsupervised model for encoding and decoding fMRI activity in visual cortex.

Authors:  Kuan Han; Haiguang Wen; Junxing Shi; Kun-Han Lu; Yizhen Zhang; Di Fu; Zhongming Liu
Journal:  Neuroimage       Date:  2019-05-16       Impact factor: 6.556

Review 3.  Studying the visual brain in its natural rhythm.

Authors:  David A Leopold; Soo Hyun Park
Journal:  Neuroimage       Date:  2020-04-08       Impact factor: 6.556

4.  Deep recurrent neural network reveals a hierarchy of process memory during dynamic natural vision.

Authors:  Junxing Shi; Haiguang Wen; Yizhen Zhang; Kuan Han; Zhongming Liu
Journal:  Hum Brain Mapp       Date:  2018-02-12       Impact factor: 5.038

Review 5.  Discovering the Computational Relevance of Brain Network Organization.

Authors:  Takuya Ito; Luke Hearne; Ravi Mill; Carrisa Cocuzza; Michael W Cole
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6.  Similarity judgments and cortical visual responses reflect different properties of object and scene categories in naturalistic images.

Authors:  Marcie L King; Iris I A Groen; Adam Steel; Dwight J Kravitz; Chris I Baker
Journal:  Neuroimage       Date:  2019-05-01       Impact factor: 6.556

7.  Task-evoked functional connectivity does not explain functional connectivity differences between rest and task conditions.

Authors:  Lauren K Lynch; Kun-Han Lu; Haiguang Wen; Yizhen Zhang; Andrew J Saykin; Zhongming Liu
Journal:  Hum Brain Mapp       Date:  2018-08-24       Impact factor: 5.038

Review 8.  The Face of Image Reconstruction: Progress, Pitfalls, Prospects.

Authors:  Adrian Nestor; Andy C H Lee; David C Plaut; Marlene Behrmann
Journal:  Trends Cogn Sci       Date:  2020-07-13       Impact factor: 20.229

9.  Large-Scale, High-Resolution Comparison of the Core Visual Object Recognition Behavior of Humans, Monkeys, and State-of-the-Art Deep Artificial Neural Networks.

Authors:  Rishi Rajalingham; Elias B Issa; Pouya Bashivan; Kohitij Kar; Kailyn Schmidt; James J DiCarlo
Journal:  J Neurosci       Date:  2018-07-13       Impact factor: 6.167

10.  Geometric classification of brain network dynamics via conic derivative discriminants.

Authors:  Matthew F Singh; Todd S Braver; ShiNung Ching
Journal:  J Neurosci Methods       Date:  2018-06-30       Impact factor: 2.390

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