Literature DB >> 29436055

Deep recurrent neural network reveals a hierarchy of process memory during dynamic natural vision.

Junxing Shi1,2, Haiguang Wen1,2, Yizhen Zhang1,2, Kuan Han1,2, Zhongming Liu1,2,3.   

Abstract

The human visual cortex extracts both spatial and temporal visual features to support perception and guide behavior. Deep convolutional neural networks (CNNs) provide a computational framework to model cortical representation and organization for spatial visual processing, but unable to explain how the brain processes temporal information. To overcome this limitation, we extended a CNN by adding recurrent connections to different layers of the CNN to allow spatial representations to be remembered and accumulated over time. The extended model, or the recurrent neural network (RNN), embodied a hierarchical and distributed model of process memory as an integral part of visual processing. Unlike the CNN, the RNN learned spatiotemporal features from videos to enable action recognition. The RNN better predicted cortical responses to natural movie stimuli than the CNN, at all visual areas, especially those along the dorsal stream. As a fully observable model of visual processing, the RNN also revealed a cortical hierarchy of temporal receptive window, dynamics of process memory, and spatiotemporal representations. These results support the hypothesis of process memory, and demonstrate the potential of using the RNN for in-depth computational understanding of dynamic natural vision.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  deep learning; natural vision; neural encoding; process memory; recurrent neural network; temporal receptive window

Mesh:

Substances:

Year:  2018        PMID: 29436055      PMCID: PMC5895512          DOI: 10.1002/hbm.24006

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  43 in total

1.  Predictive coding in the visual cortex: a functional interpretation of some extra-classical receptive-field effects.

Authors:  R P Rao; D H Ballard
Journal:  Nat Neurosci       Date:  1999-01       Impact factor: 24.884

2.  Increasingly complex representations of natural movies across the dorsal stream are shared between subjects.

Authors:  Umut Güçlü; Marcel A J van Gerven
Journal:  Neuroimage       Date:  2015-12-24       Impact factor: 6.556

3.  Deep Neural Networks Reveal a Gradient in the Complexity of Neural Representations across the Ventral Stream.

Authors:  Umut Güçlü; Marcel A J van Gerven
Journal:  J Neurosci       Date:  2015-07-08       Impact factor: 6.167

Review 4.  Complete functional characterization of sensory neurons by system identification.

Authors:  Michael C-K Wu; Stephen V David; Jack L Gallant
Journal:  Annu Rev Neurosci       Date:  2006       Impact factor: 12.449

Review 5.  State-dependent computations: spatiotemporal processing in cortical networks.

Authors:  Dean V Buonomano; Wolfgang Maass
Journal:  Nat Rev Neurosci       Date:  2009-01-15       Impact factor: 34.870

6.  Compressive spatial summation in human visual cortex.

Authors:  Kendrick N Kay; Jonathan Winawer; Aviv Mezer; Brian A Wandell
Journal:  J Neurophysiol       Date:  2013-04-24       Impact factor: 2.714

7.  Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision.

Authors:  Haiguang Wen; Junxing Shi; Yizhen Zhang; Kun-Han Lu; Jiayue Cao; Zhongming Liu
Journal:  Cereb Cortex       Date:  2018-12-01       Impact factor: 5.357

Review 8.  Hierarchical process memory: memory as an integral component of information processing.

Authors:  Uri Hasson; Janice Chen; Christopher J Honey
Journal:  Trends Cogn Sci       Date:  2015-05-14       Impact factor: 20.229

9.  Deep Neural Networks: A New Framework for Modeling Biological Vision and Brain Information Processing.

Authors:  Nikolaus Kriegeskorte
Journal:  Annu Rev Vis Sci       Date:  2015-11-24       Impact factor: 6.422

10.  Increasing the reliability of data analysis of functional magnetic resonance imaging by applying a new blockwise permutation method.

Authors:  Daniela Adolf; Snezhana Weston; Sebastian Baecke; Michael Luchtmann; Johannes Bernarding; Siegfried Kropf
Journal:  Front Neuroinform       Date:  2014-08-13       Impact factor: 4.081

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  10 in total

1.  Transferring and generalizing deep-learning-based neural encoding models across subjects.

Authors:  Haiguang Wen; Junxing Shi; Wei Chen; Zhongming Liu
Journal:  Neuroimage       Date:  2018-04-27       Impact factor: 6.556

2.  Constructing and Forgetting Temporal Context in the Human Cerebral Cortex.

Authors:  Hsiang-Yun Sherry Chien; Christopher J Honey
Journal:  Neuron       Date:  2020-03-11       Impact factor: 17.173

3.  Variational autoencoder: An unsupervised model for encoding and decoding fMRI activity in visual cortex.

Authors:  Kuan Han; Haiguang Wen; Junxing Shi; Kun-Han Lu; Yizhen Zhang; Di Fu; Zhongming Liu
Journal:  Neuroimage       Date:  2019-05-16       Impact factor: 6.556

4.  Deep recurrent neural network reveals a hierarchy of process memory during dynamic natural vision.

Authors:  Junxing Shi; Haiguang Wen; Yizhen Zhang; Kuan Han; Zhongming Liu
Journal:  Hum Brain Mapp       Date:  2018-02-12       Impact factor: 5.038

5.  Naturalistic Stimuli: A Paradigm for Multi-Scale Functional Characterization of the Human Brain.

Authors:  Yizhen Zhang; Jung-Hoon Kim; David Brang; Zhongming Liu
Journal:  Curr Opin Biomed Eng       Date:  2021-06-02

6.  Task-evoked functional connectivity does not explain functional connectivity differences between rest and task conditions.

Authors:  Lauren K Lynch; Kun-Han Lu; Haiguang Wen; Yizhen Zhang; Andrew J Saykin; Zhongming Liu
Journal:  Hum Brain Mapp       Date:  2018-08-24       Impact factor: 5.038

7.  High-Level Visual Encoding Model Framework with Hierarchical Ventral Stream-Optimized Neural Networks.

Authors:  Wulue Xiao; Jingwei Li; Chi Zhang; Linyuan Wang; Panpan Chen; Ziya Yu; Li Tong; Bin Yan
Journal:  Brain Sci       Date:  2022-08-19

8.  Activations of deep convolutional neural networks are aligned with gamma band activity of human visual cortex.

Authors:  Ilya Kuzovkin; Raul Vicente; Mathilde Petton; Jean-Philippe Lachaux; Monica Baciu; Philippe Kahane; Sylvain Rheims; Juan R Vidal; Jaan Aru
Journal:  Commun Biol       Date:  2018-08-08

9.  Deep Learning Intervention for Health Care Challenges: Some Biomedical Domain Considerations.

Authors:  Igbe Tobore; Jingzhen Li; Liu Yuhang; Yousef Al-Handarish; Abhishek Kandwal; Zedong Nie; Lei Wang
Journal:  JMIR Mhealth Uhealth       Date:  2019-08-02       Impact factor: 4.773

Review 10.  Movies and narratives as naturalistic stimuli in neuroimaging.

Authors:  Iiro P Jääskeläinen; Mikko Sams; Enrico Glerean; Jyrki Ahveninen
Journal:  Neuroimage       Date:  2020-10-12       Impact factor: 6.556

  10 in total

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