Literature DB >> 29045870

Exchange of Gramicidin between Lipid Bilayers: Implications for the Mechanism of Channel Formation.

Kevin Lum1, Helgi I Ingólfsson1, Roger E Koeppe2, Olaf S Andersen3.   

Abstract

The canonical mechanism of gramicidin (gA) channel formation is transmembrane dimerization of nonconducting subunits that reside in opposite bilayer leaflets. The channels do not open and close; they appear and disappear due to subunit association and dissociation. Many different types of experiments support this monomer ↔ dimer mechanism. Recently, however, this mechanism was challenged, based on experiments with lipid vesicle-incorporated gA under conditions where vesicle fusion could be controlled. In these experiments, sustained channel activity was observed long after fusion had been terminated, which led to the proposal that gA single-channel current transitions result from closed-open transitions in long-lived bilayer-spanning dimers. This proposal is at odds with 40 years of experiments, but involves the key assumption that gA monomers do not exchange between bilayers. We tested the possibility of peptide exchange between bilayers using three different types of experiments. First, we demonstrated the exchange of gA between 1,2-dierucoyl-sn-glycero-3-phosphocholine (DC22:1PC) or 1,2-dioleoyl-sn-glycero-3-phosphocholine (DC18:1PC) lipid vesicles using a fluorescence assay for gA channel activity. Second, we added gA-free DC22:1PC vesicles to both sides of planar DC18:1PC bilayers preincubated with gA, which reduced channel activity up to 10-fold. Third, we added gA-containing DC22:1PC vesicles to one or both sides of DC18:1PC planar bilayers, which produced much higher channel activity when the gA-containing vesicles were added to both sides of the bilayer, as compared to one side only. All three types of experiments show that gA subunits can exchange between lipid bilayers. The exchange of subunits between bilayers thus is firmly established, which becomes a crucial consideration with respect to the mechanism of channel formation.
Copyright © 2017 Biophysical Society. All rights reserved.

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Year:  2017        PMID: 29045870      PMCID: PMC5647621          DOI: 10.1016/j.bpj.2017.08.049

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  45 in total

1.  On the helix sense of gramicidin A single channels.

Authors:  R E Koeppe; L L Providence; D V Greathouse; F Heitz; Y Trudelle; N Purdie; O S Andersen
Journal:  Proteins       Date:  1992-01

2.  Single channel activity of OmpF-like porin from Yersinia pseudotuberculosis.

Authors:  Tatyana I Rokitskaya; Elena A Kotova; Gennadiy A Naberezhnykh; Valentina A Khomenko; Vladimir I Gorbach; Alexander M Firsov; Elena A Zelepuga; Yuri N Antonenko; Olga D Novikova
Journal:  Biochim Biophys Acta       Date:  2016-02-17

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Authors:  N J Hickok; K Kustin; W Veatch
Journal:  Biochim Biophys Acta       Date:  1986-06-13

4.  Design and characterization of gramicidin channels.

Authors:  D V Greathouse; R E Koeppe; L L Providence; S Shobana; O S Andersen
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

5.  High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints.

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Journal:  Structure       Date:  1997-12-15       Impact factor: 5.006

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Journal:  J Gen Physiol       Date:  1976-06       Impact factor: 4.086

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Authors:  S B Hladky; D A Haydon
Journal:  Nature       Date:  1970-01-31       Impact factor: 49.962

8.  Single channels of 9, 11, 13, 15-destryptophyl-phenylalanyl-gramicidin A.

Authors:  F Heitz; G Spach; Y Trudelle
Journal:  Biophys J       Date:  1982-10       Impact factor: 4.033

9.  Simultaneous fluorescence and conductance studies of planar bilayer membranes containing a highly active and fluorescent analog of gramicidin A.

Authors:  W R Veatch; R Mathies; M Eisenberg; L Stryer
Journal:  J Mol Biol       Date:  1975-11-25       Impact factor: 5.469

10.  Gramicidin channels in phospholipid bilayers with unsaturated acyl chains.

Authors:  J Girshman; D V Greathouse; R E Koeppe; O S Andersen
Journal:  Biophys J       Date:  1997-09       Impact factor: 4.033

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  3 in total

1.  Membrane Elastic Deformations Modulate Gramicidin A Transbilayer Dimerization and Lateral Clustering.

Authors:  Oleg V Kondrashov; Timur R Galimzyanov; Konstantin V Pavlov; Elena A Kotova; Yuri N Antonenko; Sergey A Akimov
Journal:  Biophys J       Date:  2018-07-11       Impact factor: 4.033

2.  Assessing the Perturbing Effects of Drugs on Lipid Bilayers Using Gramicidin Channel-Based In Silico and In Vitro Assays.

Authors:  Delin Sun; Thasin A Peyear; W F Drew Bennett; Matthew Holcomb; Stewart He; Fangqiang Zhu; Felice C Lightstone; Olaf S Andersen; Helgi I Ingólfsson
Journal:  J Med Chem       Date:  2020-10-01       Impact factor: 7.446

3.  Molecular Mechanism for Gramicidin Dimerization and Dissociation in Bilayers of Different Thickness.

Authors:  Delin Sun; Thasin A Peyear; W F Drew Bennett; Olaf S Andersen; Felice C Lightstone; Helgi I Ingólfsson
Journal:  Biophys J       Date:  2019-10-10       Impact factor: 4.033

  3 in total

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